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Chlorine in PDB 3k93: Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution

Protein crystallography data

The structure of Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution, PDB code: 3k93 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.34 / 2.15
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.369, 113.369, 42.284, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 21.2

Other elements in 3k93:

The structure of Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution (pdb code 3k93). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution, PDB code: 3k93:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3k93

Go back to Chlorine Binding Sites List in 3k93
Chlorine binding site 1 out of 2 in the Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl224

b:47.9
occ:1.00
OH A:TYR143 3.2 14.7 1.0
NH2 A:ARG88 3.5 40.5 1.0
CA A:GLY96 3.8 11.2 1.0
N A:GLU97 3.8 12.6 1.0
N A:SER12 3.8 14.7 1.0
N A:CYS11 3.8 14.2 1.0
NH1 A:ARG88 3.9 37.7 1.0
OG A:SER12 4.0 19.5 1.0
CE1 A:TYR143 4.0 12.7 1.0
CB A:CYS11 4.1 13.9 1.0
CZ A:TYR143 4.1 14.8 1.0
O A:THR95 4.2 9.2 1.0
CB A:SER12 4.2 16.3 1.0
CZ A:ARG88 4.2 37.2 1.0
C A:GLY96 4.3 12.0 1.0
CA A:CYS11 4.3 13.6 1.0
CB A:ARG10 4.4 16.6 1.0
O A:GLU97 4.5 13.7 1.0
C A:CYS11 4.6 14.3 1.0
C A:ARG10 4.6 14.1 1.0
CA A:SER12 4.7 15.8 1.0
N A:GLY96 4.7 10.5 1.0
CA A:ARG10 4.8 15.1 1.0
C A:THR95 4.8 9.8 1.0
CA A:GLU97 4.9 13.8 1.0
C A:GLU97 4.9 13.4 1.0
CD A:ARG10 5.0 24.5 1.0

Chlorine binding site 2 out of 2 in 3k93

Go back to Chlorine Binding Sites List in 3k93
Chlorine binding site 2 out of 2 in the Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Phage Related Exonuclease (YP_719632.1) From Haemophilus Somnus 129PT at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl225

b:32.9
occ:1.00
OG A:SER119 3.0 13.8 1.0
O2 A:GOL226 3.1 73.2 1.0
NZ A:LYS130 3.2 20.7 1.0
N A:TRP115 3.2 10.7 1.0
CB A:SER119 3.5 12.9 1.0
CA A:SER114 3.7 12.0 1.0
O A:HOH277 3.9 24.4 1.0
C A:SER114 4.0 12.1 1.0
O A:HOH261 4.0 27.8 1.0
CB A:TRP115 4.0 10.7 1.0
CB A:SER114 4.2 12.4 1.0
CA A:TRP115 4.3 11.3 1.0
CE A:LYS130 4.4 19.0 1.0
C2 A:GOL226 4.5 74.6 1.0
O A:SER119 4.5 12.2 1.0
C A:SER119 4.6 11.6 1.0
O A:HOH232 4.6 10.3 1.0
CA A:SER119 4.7 12.4 1.0
OG A:SER114 4.7 12.1 1.0
O A:CYS113 4.8 12.7 1.0
N A:SER114 4.8 12.9 1.0
O1 A:GOL226 5.0 74.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 06:53:13 2025

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