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Chlorine in PDB 3k9t: Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution, PDB code: 3k9t was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.06 / 2.37
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 153.782, 153.782, 168.378, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 21.2

Other elements in 3k9t:

The structure of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution (pdb code 3k9t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution, PDB code: 3k9t:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3k9t

Go back to Chlorine Binding Sites List in 3k9t
Chlorine binding site 1 out of 2 in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl436

b:49.1
occ:1.00
NH1 A:ARG417 3.2 42.3 1.0
N A:GLU414 3.2 22.3 1.0
CD A:ARG417 3.5 36.4 1.0
CA A:MSE413 3.7 33.6 1.0
CB A:MSE413 3.8 27.5 1.0
CB A:GLU414 3.8 26.3 1.0
C A:MSE413 4.0 27.1 1.0
CA A:GLU414 4.1 30.5 1.0
CG A:MSE413 4.2 31.3 1.0
CZ A:ARG417 4.2 43.1 1.0
O A:HOH630 4.3 49.9 1.0
NE A:ARG417 4.3 81.5 1.0
CB A:ARG417 4.7 23.6 1.0
CG A:ARG417 4.7 48.9 1.0
O A:GLY412 4.8 29.5 1.0
CE1 A:HIS281 4.8 33.0 1.0
ND1 A:HIS281 4.9 24.9 1.0
N A:MSE413 5.0 27.6 1.0

Chlorine binding site 2 out of 2 in 3k9t

Go back to Chlorine Binding Sites List in 3k9t
Chlorine binding site 2 out of 2 in the Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Peptidase (NP_348812.1) From Clostridium Acetobutylicum at 2.37 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl437

b:68.8
occ:1.00
N A:TYR172 3.4 25.2 1.0
CA A:TYR171 3.9 24.5 1.0
CD1 A:TYR171 4.0 24.2 1.0
O A:GLU170 4.0 24.2 1.0
C A:TYR171 4.2 26.0 1.0
CB A:TYR172 4.2 23.9 1.0
O A:TYR172 4.2 29.9 1.0
CA A:TYR172 4.3 25.6 1.0
CE1 A:TYR171 4.7 23.9 1.0
N A:GLU51 4.7 22.6 1.0
C A:GLU170 4.7 25.2 1.0
N A:TYR171 4.8 24.5 1.0
CB A:GLU51 4.8 22.7 1.0
C A:TYR172 4.8 25.5 1.0
CG A:TYR171 4.9 25.4 1.0
CB A:TYR171 4.9 23.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 06:53:52 2025

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