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Chlorine in PDB 3kk7: Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution, PDB code: 3kk7 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 2.46
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.400, 127.200, 138.250, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution (pdb code 3kk7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution, PDB code: 3kk7:

Chlorine binding site 1 out of 1 in 3kk7

Go back to Chlorine Binding Sites List in 3kk7
Chlorine binding site 1 out of 1 in the Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Cell Invasion Protein with Mac/Perforin Domain (NP_812351.1) From Bacteriodes Thetaiotaomicron Vpi-5482 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:52.0
occ:1.00
ND2 A:ASN332 3.2 22.7 1.0
N A:ASP329 3.4 28.4 1.0
CB A:ASN332 4.0 26.3 1.0
CA A:TYR328 4.0 28.6 1.0
CB A:ASP329 4.1 28.8 1.0
CG A:ASN332 4.1 25.8 1.0
CD1 A:TYR328 4.2 33.7 1.0
C A:TYR328 4.2 28.3 1.0
CB A:TYR328 4.3 29.3 1.0
CA A:ASP329 4.3 28.8 1.0
CB A:TYR333 4.3 28.9 1.0
O A:ASP329 4.5 29.2 1.0
CG A:TYR328 4.8 31.4 1.0
N A:TYR333 4.8 27.9 1.0
C A:ASP329 4.9 29.1 1.0

Reference:

Q.Xu, P.Abdubek, T.Astakhova, H.L.Axelrod, C.Bakolitsa, X.Cai, D.Carlton, C.Chen, H.J.Chiu, T.Clayton, D.Das, M.C.Deller, L.Duan, K.Ellrott, C.L.Farr, J.Feuerhelm, J.C.Grant, A.Grzechnik, G.W.Han, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, P.Kozbial, S.S.Krishna, A.Kumar, W.W.Lam, D.Marciano, M.D.Miller, A.T.Morse, E.Nigoghossian, A.Nopakun, L.Okach, C.Puckett, R.Reyes, H.J.Tien, C.B.Trame, H.Van Den Bedem, D.Weekes, T.Wooten, A.Yeh, J.Zhou, K.O.Hodgson, J.Wooley, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Structure of A Membrane-Attack Complex/Perforin (Macpf) Family Protein From the Human Gut Symbiont Bacteroides Thetaiotaomicron. Acta Crystallogr.,Sect.F V. 66 1297 2010.
ISSN: ESSN 1744-3091
PubMed: 20944225
DOI: 10.1107/S1744309110023055
Page generated: Sat Jul 20 22:42:42 2024

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