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Chlorine in PDB 3kya: Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution, PDB code: 3kya was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.26 / 1.77
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 94.830, 124.623, 98.389, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 19.8

Other elements in 3kya:

The structure of Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution (pdb code 3kya). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution, PDB code: 3kya:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3kya

Go back to Chlorine Binding Sites List in 3kya
Chlorine binding site 1 out of 2 in the Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl20

b:41.1
occ:1.00
NZ A:LYS69 3.2 9.6 1.0
N A:GLU108 3.3 16.4 1.0
CE A:LYS69 3.8 12.0 1.0
CA A:GLY107 3.9 15.6 1.0
O A:GLU108 3.9 18.1 1.0
CB A:ASN111 4.0 22.1 1.0
CD A:LYS69 4.0 11.8 1.0
C A:GLY107 4.0 15.9 1.0
CB A:GLU108 4.1 16.7 1.0
CA A:GLU108 4.1 17.1 1.0
ND2 A:ASN111 4.2 25.5 1.0
CG A:GLU108 4.4 16.9 1.0
C A:GLU108 4.5 18.1 1.0
CG A:ASN111 4.6 22.8 1.0
OE2 A:GLU108 5.0 16.1 1.0

Chlorine binding site 2 out of 2 in 3kya

Go back to Chlorine Binding Sites List in 3kya
Chlorine binding site 2 out of 2 in the Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Phosphatase (NP_812416.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.77 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl21

b:36.3
occ:0.50
OD1 A:ASN395 1.7 18.5 0.5
CG A:ASN395 2.5 15.1 0.5
O A:HOH931 2.5 24.8 1.0
ND2 A:ASN395 2.8 17.4 0.5
NE A:ARG420 3.0 17.7 1.0
OD1 A:ASN395 3.1 11.8 0.5
O A:HOH593 3.2 21.3 1.0
CG2 A:ILE351 3.2 14.1 1.0
NH2 A:ARG420 3.4 21.9 1.0
SG A:CYS397 3.6 15.3 1.0
CZ A:ARG420 3.6 19.2 1.0
ND2 A:ASN163 3.7 14.2 1.0
O A:HOH832 3.7 24.9 1.0
CB A:ASN395 3.9 13.4 0.5
CG A:ASN395 3.9 13.1 0.5
CB A:ASN395 4.0 14.1 0.5
CD A:ARG420 4.1 15.8 1.0
O A:HOH694 4.1 33.6 1.0
O A:HOH814 4.3 32.0 1.0
O A:HOH770 4.5 34.1 1.0
CB A:ILE351 4.7 14.6 1.0
O A:ASN395 4.7 13.5 1.0
CA A:ASN395 4.8 13.6 0.5
CA A:ASN395 4.9 13.9 0.5
CG A:ASN163 4.9 13.5 1.0
NH1 A:ARG420 4.9 20.1 1.0
CB A:ARG420 4.9 13.8 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 07:08:00 2025

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