Atomistry » Chlorine » PDB 3ku9-3l29 » 3kzp
Atomistry »
  Chlorine »
    PDB 3ku9-3l29 »
      3kzp »

Chlorine in PDB 3kzp: Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes

Protein crystallography data

The structure of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes, PDB code: 3kzp was solved by M.M.Klimecka, M.Chruszcz, M.D.Zimmerman, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.766, 92.040, 96.210, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 23.9

Other elements in 3kzp:

The structure of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes (pdb code 3kzp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes, PDB code: 3kzp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3kzp

Go back to Chlorine Binding Sites List in 3kzp
Chlorine binding site 1 out of 6 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl236

b:48.2
occ:1.00
 O A:HOH343 2.8 20.2 1.0
N A:ILE223 2.9 25.5 1.0
O A:HOH294 3.0 13.9 1.0
N A:SER222 3.1 31.3 1.0
O A:ILE223 3.6 19.9 1.0
CA A:SER222 3.7 30.1 1.0
C A:SER222 3.8 28.7 1.0
CG A:GLN196 3.8 19.1 1.0
CA A:ILE223 3.8 23.2 1.0
CB A:SER222 3.9 30.8 1.0
CB A:ALA192 3.9 8.8 1.0
O A:GLY220 3.9 35.8 1.0
C A:VAL221 4.0 31.4 1.0
C A:ILE223 4.1 22.3 1.0
CB A:ILE223 4.1 23.1 1.0
O A:ALA192 4.1 10.5 1.0
CA A:VAL221 4.3 32.4 1.0
C A:ALA192 4.4 9.8 1.0
CD A:GLN196 4.6 23.9 1.0
CA A:ALA192 4.6 9.5 1.0
NE2 A:GLN196 4.7 26.6 1.0
CG1 A:ILE223 4.7 23.0 1.0
C A:GLY220 4.9 35.8 1.0
O A:VAL221 5.0 30.9 1.0
O A:SER222 5.0 28.7 1.0

Chlorine binding site 2 out of 6 in 3kzp

Go back to Chlorine Binding Sites List in 3kzp
Chlorine binding site 2 out of 6 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl237

b:21.2
occ:1.00
 O A:HOH280 3.0 23.8 1.0
O A:HOH382 3.0 20.4 1.0
O A:HOH363 3.2 36.6 1.0
N A:LEU28 3.3 12.4 1.0
ND2 A:ASN78 3.3 13.7 1.0
O A:HOH256 3.7 11.3 1.0
CA A:LEU27 3.8 11.3 1.0
CB A:ASN78 3.9 12.8 1.0
CB A:LEU28 3.9 14.9 1.0
CE1 A:PHE37 3.9 19.1 1.0
CG A:ASN78 4.0 13.5 1.0
C A:LEU27 4.0 12.5 1.0
O A:ILE26 4.1 14.9 1.0
CA A:LEU28 4.2 13.9 1.0
CD2 A:LEU27 4.2 10.7 1.0
CG A:LEU28 4.3 20.6 1.0
CD1 A:PHE37 4.3 22.2 1.0
CB A:LEU27 4.5 11.9 1.0
N A:LEU27 4.8 12.0 1.0
O A:HOH359 4.8 25.9 1.0
C A:ILE26 4.8 13.1 1.0
O A:LEU28 4.9 11.3 1.0

Chlorine binding site 3 out of 6 in 3kzp

Go back to Chlorine Binding Sites List in 3kzp
Chlorine binding site 3 out of 6 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl238

b:27.1
occ:1.00
 OG A:SER150 3.1 13.7 1.0
OG B:SER150 3.2 13.9 1.0
CA B:SER150 3.6 11.5 1.0
CA A:SER150 3.6 11.4 1.0
CB A:SER150 3.7 12.4 1.0
CB B:SER150 3.7 14.2 1.0
CA B:SER155 3.7 12.3 1.0
CA A:SER155 3.7 10.6 1.0
N A:LEU156 3.8 10.7 1.0
N B:LEU156 3.8 12.2 1.0
CB A:SER155 4.0 10.3 1.0
CB B:SER155 4.1 12.0 1.0
C A:SER155 4.3 11.0 1.0
C B:SER155 4.3 11.7 1.0
N B:SER150 4.4 11.7 1.0
N A:SER150 4.4 12.7 1.0
C B:SER150 4.5 11.2 1.0
C A:SER150 4.6 11.0 1.0
CZ2 A:TRP191 4.7 12.5 1.0
O B:SER150 4.7 10.2 1.0
CZ2 B:TRP191 4.7 11.0 1.0
O A:SER150 4.8 10.1 1.0
O B:ASN154 4.9 11.0 1.0
N B:SER155 4.9 11.7 1.0
O A:ASN154 4.9 10.2 1.0
N A:SER155 4.9 11.8 1.0
CB A:LEU156 4.9 10.3 1.0
CB B:LEU156 4.9 10.4 1.0
CA A:LEU156 4.9 10.8 1.0
CA B:LEU156 5.0 11.2 1.0

Chlorine binding site 4 out of 6 in 3kzp

Go back to Chlorine Binding Sites List in 3kzp
Chlorine binding site 4 out of 6 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl239

b:41.3
occ:1.00
 O A:HOH371 3.0 19.9 1.0
N A:ASN178 3.1 26.4 1.0
O A:HOH409 3.2 30.7 1.0
C A:PHE176 3.6 23.2 1.0
N A:ILE179 3.6 24.9 1.0
CA A:ASN178 3.6 26.5 1.0
CA A:PHE176 3.7 21.6 1.0
CB A:ASN178 3.7 26.8 1.0
CG1 A:ILE179 3.7 25.8 1.0
CE B:MSE160 3.7 31.6 1.0
C A:ASN178 3.9 26.0 1.0
N A:LYS177 3.9 25.6 1.0
O A:PHE176 3.9 21.4 1.0
CG B:MSE160 4.0 24.0 1.0
C A:LYS177 4.2 27.1 1.0
ND2 A:ASN178 4.3 27.2 1.0
O A:HIS175 4.3 20.0 1.0
CB B:MSE160 4.4 16.0 1.0
CG A:ASN178 4.4 26.2 1.0
CB A:PHE176 4.5 22.2 1.0
CD1 A:ILE179 4.5 21.1 1.0
CA A:LYS177 4.5 27.0 1.0
SE B:MSE160 4.6 38.9 1.0
CD1 A:PHE176 4.7 19.6 1.0
CB A:ILE179 4.7 24.2 1.0
CA A:ILE179 4.7 24.7 1.0
N A:PHE176 4.7 21.1 1.0
O A:ASN178 4.7 25.9 1.0
C A:HIS175 5.0 20.9 1.0
O B:HOH266 5.0 17.1 1.0

Chlorine binding site 5 out of 6 in 3kzp

Go back to Chlorine Binding Sites List in 3kzp
Chlorine binding site 5 out of 6 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl236

b:22.1
occ:1.00
 O B:HOH271 3.0 18.2 1.0
O B:HOH309 3.2 27.6 1.0
O B:HOH317 3.2 22.4 1.0
N B:LEU28 3.3 10.7 0.5
N B:LEU28 3.3 10.6 0.5
ND2 B:ASN78 3.4 15.1 1.0
O B:HOH241 3.7 14.5 1.0
CA B:LEU27 3.7 10.8 1.0
CB B:ASN78 3.8 12.7 1.0
CG B:LEU28 3.8 10.1 0.5
CE1 B:PHE37 3.9 18.4 1.0
C B:LEU27 4.0 11.3 1.0
CG B:ASN78 4.0 14.7 1.0
O B:ILE26 4.1 14.6 1.0
CB B:LEU28 4.1 10.4 0.5
CB B:LEU28 4.1 10.4 0.5
CA B:LEU28 4.3 10.8 0.5
CA B:LEU28 4.3 10.8 0.5
CD2 B:LEU27 4.3 11.3 1.0
CD1 B:PHE37 4.4 22.3 1.0
CD1 B:LEU28 4.4 7.0 0.5
CB B:LEU27 4.5 11.2 1.0
O B:HOH356 4.6 36.6 1.0
N B:LEU27 4.7 12.4 1.0
C B:ILE26 4.8 13.4 1.0
CD2 B:LEU28 4.9 11.3 0.5
O B:LEU28 4.9 10.8 0.5
O B:LEU28 5.0 10.8 0.5
CD2 B:LEU28 5.0 12.1 0.5
CA B:ASN78 5.0 13.4 1.0

Chlorine binding site 6 out of 6 in 3kzp

Go back to Chlorine Binding Sites List in 3kzp
Chlorine binding site 6 out of 6 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl238

b:53.6
occ:1.00
 N B:ILE87 3.1 14.5 1.0
NE2 B:HIS117 3.1 22.3 1.0
CA B:TYR86 3.4 13.3 1.0
O B:PHE85 3.5 14.1 1.0
C B:TYR86 3.8 13.6 1.0
CE1 B:HIS117 3.8 22.4 1.0
CG1 B:ILE87 3.8 19.1 1.0
CG2 B:ILE87 3.8 18.3 1.0
CD1 B:TYR86 3.9 17.6 1.0
CD2 B:HIS117 3.9 20.0 1.0
CB B:ILE87 4.1 16.6 1.0
CA B:ILE87 4.2 16.2 1.0
C B:PHE85 4.3 12.1 1.0
CB B:TYR86 4.4 12.3 1.0
N B:TYR86 4.4 12.1 1.0
CD1 B:ILE87 4.6 22.9 1.0
CG B:TYR86 4.6 14.7 1.0
ND1 B:HIS117 4.8 23.2 1.0
CE1 B:TYR86 4.8 17.2 1.0
CG B:HIS117 4.9 18.5 1.0
CD B:GLU49 4.9 29.7 1.0
OE2 B:GLU49 4.9 31.1 1.0
O B:TYR86 5.0 11.8 1.0

Reference:

M.M.Klimecka, M.Chruszcz, M.D.Zimmerman, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor. Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes To Be Published.
Page generated: Fri Jul 11 07:09:07 2025

Last articles

Mg in 2HRY
Mg in 2HQU
Mg in 2HRS
Mg in 2HLD
Mg in 2HPM
Mg in 2HQZ
Mg in 2HPI
Mg in 2HOP
Mg in 2HOM
Mg in 2HO7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy