Atomistry » Chlorine » PDB 3lcd-3lnr » 3lmm
Atomistry »
  Chlorine »
    PDB 3lcd-3lnr »
      3lmm »

Chlorine in PDB 3lmm: Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35

Protein crystallography data

The structure of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35, PDB code: 3lmm was solved by F.Forouhar, S.Lew, J.Seetharaman, M.Mao, R.Xiao, C.Ciccosanti, W.A.Buchwald, M.Maglaqui, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 147.306, 102.030, 164.515, 90.00, 116.00, 90.00
R / Rfree (%) 18.3 / 23.1

Other elements in 3lmm:

The structure of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 also contains other interesting chemical elements:

Cobalt (Co) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 (pdb code 3lmm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35, PDB code: 3lmm:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3lmm

Go back to Chlorine Binding Sites List in 3lmm
Chlorine binding site 1 out of 6 in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl584

b:28.1
occ:1.00
N A:ALA358 3.2 12.5 1.0
CD A:PRO357 3.3 21.3 1.0
N A:PRO357 3.3 18.9 1.0
CA A:TYR356 3.3 16.9 1.0
C A:TYR356 3.4 20.4 1.0
CB A:MSE177 3.4 22.0 1.0
N A:MSE177 3.5 16.8 1.0
CB A:ALA358 3.6 11.6 1.0
CB A:ASP175 3.7 41.0 1.0
CB A:TYR356 3.8 21.1 1.0
CD A:PRO176 3.8 14.3 1.0
CA A:ASP175 3.9 38.4 1.0
C A:ASP175 3.9 31.1 1.0
N A:PRO176 4.0 22.6 1.0
CA A:MSE177 4.0 23.6 1.0
CG A:PRO176 4.0 10.4 1.0
CA A:ALA358 4.0 13.9 1.0
OD1 A:ASP175 4.0 48.1 1.0
CG A:ASP175 4.1 49.8 1.0
O A:TYR356 4.1 22.1 1.0
CA A:PRO357 4.1 22.1 1.0
C A:PRO357 4.2 19.6 1.0
CD1 A:TYR356 4.2 29.8 1.0
CB A:PRO357 4.3 23.3 1.0
O A:ARG355 4.3 25.9 1.0
CG A:PRO357 4.4 22.6 1.0
O A:ASP175 4.4 36.1 1.0
CG A:TYR356 4.5 19.6 1.0
C A:PRO176 4.5 20.2 1.0
N A:TYR356 4.6 16.5 1.0
C A:MSE177 4.6 27.7 1.0
N A:LEU359 4.6 12.1 1.0
N A:ALA178 4.6 31.6 1.0
CA A:PRO176 4.7 22.5 1.0
CG A:MSE177 4.7 32.9 1.0
C A:ALA358 4.9 17.6 1.0
C A:ARG355 4.9 24.2 1.0
CB A:PRO176 5.0 19.8 1.0
OD2 A:ASP175 5.0 55.6 1.0

Chlorine binding site 2 out of 6 in 3lmm

Go back to Chlorine Binding Sites List in 3lmm
Chlorine binding site 2 out of 6 in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl585

b:71.2
occ:1.00
O A:ALA358 3.4 14.6 1.0
CB A:LEU362 3.8 5.2 1.0
O A:GLY216 3.9 23.6 1.0
CD1 A:LEU362 4.1 1.0 1.0
N A:LEU362 4.1 17.4 1.0
CA A:LEU362 4.2 12.5 1.0
C A:ALA358 4.2 17.6 1.0
NE1 A:TRP165 4.2 16.8 1.0
OD2 A:ASP361 4.3 31.2 1.0
CE2 A:TRP165 4.3 20.7 1.0
O A:ILE215 4.3 31.5 1.0
CG A:LEU362 4.4 3.1 1.0
C A:GLY216 4.4 24.2 1.0
OG A:SER225 4.4 20.7 1.0
CB A:ALA227 4.5 13.6 1.0
CZ2 A:TRP165 4.6 25.5 1.0
CA A:ALA358 4.6 13.9 1.0
CD1 A:TRP165 4.6 25.0 1.0
CB A:ALA358 4.7 11.6 1.0
CD2 A:LEU362 4.7 1.5 1.0
CD2 A:TRP165 4.7 18.4 1.0
CG A:TRP165 4.9 18.7 1.0
CB A:ASP361 4.9 15.3 1.0
C A:ASP361 5.0 20.8 1.0
N A:ALA217 5.0 22.5 1.0

Chlorine binding site 3 out of 6 in 3lmm

Go back to Chlorine Binding Sites List in 3lmm
Chlorine binding site 3 out of 6 in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl586

b:58.1
occ:1.00
NE A:ARG298 3.2 44.2 1.0
CD A:ARG298 3.2 31.3 1.0
OD1 A:ASN279 3.7 31.4 1.0
CA A:ASN276 3.7 34.2 1.0
OD1 A:ASN276 3.9 77.6 1.0
O A:LEU275 3.9 23.4 1.0
CB A:ASN279 4.0 21.8 1.0
N A:ASN276 4.0 31.4 1.0
C A:LEU275 4.1 25.4 1.0
CG A:ASN279 4.3 21.5 1.0
CG1 A:VAL301 4.4 3.7 1.0
CB A:VAL301 4.4 13.7 1.0
CZ A:ARG298 4.4 45.8 1.0
CG2 A:VAL301 4.4 10.2 1.0
CG A:ARG298 4.4 19.5 1.0
CB A:ASN276 4.4 46.9 1.0
CA A:ARG298 4.6 19.4 1.0
CG A:ASN276 4.6 64.7 1.0
CB A:LEU275 4.7 12.5 1.0
CB A:ARG298 4.8 14.4 1.0
C A:ASN276 4.8 28.8 1.0
CG A:LEU275 4.9 9.4 1.0
NH1 A:ARG298 4.9 29.5 1.0

Chlorine binding site 4 out of 6 in 3lmm

Go back to Chlorine Binding Sites List in 3lmm
Chlorine binding site 4 out of 6 in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl584

b:40.8
occ:1.00
CD B:PRO357 3.2 36.0 1.0
CA B:TYR356 3.3 42.6 1.0
N B:PRO357 3.4 39.1 1.0
CB B:MSE177 3.4 37.8 1.0
N B:ALA358 3.4 23.2 1.0
C B:TYR356 3.4 37.2 1.0
N B:MSE177 3.4 31.6 1.0
CB B:ASP175 3.7 50.5 1.0
CD B:PRO176 3.7 39.9 1.0
CB B:ALA358 3.7 12.6 1.0
CG B:PRO176 3.9 27.0 1.0
CB B:TYR356 3.9 42.0 1.0
CA B:MSE177 4.0 37.8 1.0
N B:PRO176 4.0 45.3 1.0
C B:ASP175 4.0 49.9 1.0
CA B:ASP175 4.0 52.4 1.0
CD1 B:TYR356 4.1 46.0 1.0
CA B:ALA358 4.2 17.5 1.0
CG B:ASP175 4.2 49.2 1.0
O B:TYR356 4.2 37.9 1.0
CA B:PRO357 4.3 35.7 1.0
C B:PRO357 4.3 31.9 1.0
OD1 B:ASP175 4.4 35.2 1.0
CG B:PRO357 4.4 31.4 1.0
O B:ARG355 4.4 35.1 1.0
CB B:PRO357 4.5 30.4 1.0
CG B:TYR356 4.5 37.3 1.0
N B:ALA178 4.5 38.1 1.0
C B:PRO176 4.5 35.4 1.0
N B:LEU359 4.6 23.8 1.0
N B:TYR356 4.6 49.8 1.0
O B:ASP175 4.6 59.5 1.0
CA B:PRO176 4.7 40.7 1.0
CG B:MSE177 4.7 59.0 1.0
C B:MSE177 4.7 37.6 1.0
OD2 B:ASP175 4.9 61.0 1.0
CB B:PRO176 4.9 31.8 1.0
C B:ARG355 4.9 47.6 1.0
C B:ALA358 5.0 24.4 1.0

Chlorine binding site 5 out of 6 in 3lmm

Go back to Chlorine Binding Sites List in 3lmm
Chlorine binding site 5 out of 6 in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl584

b:38.0
occ:1.00
N C:MSE177 3.0 20.0 1.0
CB C:MSE177 3.3 21.1 1.0
CD C:PRO176 3.4 25.7 1.0
CB C:ASP175 3.4 39.9 1.0
N C:PRO176 3.4 29.1 1.0
C C:ASP175 3.4 31.9 1.0
CG C:PRO176 3.5 16.3 1.0
N C:ALA358 3.5 16.3 1.0
CB C:ALA358 3.6 14.1 1.0
CA C:ASP175 3.6 33.2 1.0
CA C:MSE177 3.6 15.8 1.0
CD C:PRO357 3.6 11.6 1.0
OD1 C:ASP175 3.7 45.8 1.0
N C:PRO357 3.8 19.9 1.0
CG C:ASP175 3.8 48.0 1.0
CA C:TYR356 3.9 27.4 1.0
N C:ALA178 3.9 16.7 1.0
O C:ASP175 3.9 32.8 1.0
C C:PRO176 3.9 24.4 1.0
C C:TYR356 4.0 23.4 1.0
CA C:PRO176 4.1 25.8 1.0
C C:MSE177 4.2 16.9 1.0
CA C:ALA358 4.2 12.0 1.0
CB C:TYR356 4.3 37.9 1.0
CB C:PRO176 4.4 22.5 1.0
CD1 C:TYR356 4.4 28.9 1.0
C C:PRO357 4.5 20.6 1.0
CA C:PRO357 4.6 19.4 1.0
CG C:MSE177 4.7 37.3 1.0
O C:TYR356 4.7 24.6 1.0
CB C:PRO357 4.7 16.4 1.0
CG C:PRO357 4.8 17.4 1.0
O C:ARG355 4.8 32.9 1.0
OD2 C:ASP175 4.8 50.8 1.0
N C:LEU359 4.8 14.8 1.0
CG C:TYR356 4.9 33.3 1.0
CB C:ALA178 4.9 24.7 1.0

Chlorine binding site 6 out of 6 in 3lmm

Go back to Chlorine Binding Sites List in 3lmm
Chlorine binding site 6 out of 6 in the Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the DIP2311 Protein From Corynebacterium Diphtheriae, Northeast Structural Genomics Consortium Target CDR35 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl584

b:47.5
occ:1.00
CB D:MSE177 3.1 52.1 1.0
N D:MSE177 3.3 40.8 1.0
CD D:PRO357 3.4 34.3 1.0
CB D:ASP175 3.5 52.9 1.0
N D:ALA358 3.5 24.7 1.0
N D:PRO357 3.6 33.2 1.0
CA D:TYR356 3.6 36.9 1.0
C D:TYR356 3.6 37.6 1.0
CA D:MSE177 3.7 46.6 1.0
C D:ASP175 3.8 45.0 1.0
CB D:ALA358 3.8 11.4 1.0
CD D:PRO176 3.8 36.5 1.0
CA D:ASP175 3.8 47.7 1.0
OD1 D:ASP175 3.8 55.6 1.0
N D:PRO176 3.9 45.2 1.0
CG D:ASP175 3.9 55.1 1.0
CG D:PRO176 4.0 37.3 1.0
CB D:TYR356 4.1 42.1 1.0
CD1 D:TYR356 4.1 47.6 1.0
CA D:ALA358 4.2 21.8 1.0
O D:ASP175 4.2 44.9 1.0
O D:TYR356 4.3 43.0 1.0
C D:PRO176 4.4 45.0 1.0
CA D:PRO357 4.4 32.9 1.0
C D:PRO357 4.4 28.8 1.0
CG D:MSE177 4.4 67.8 1.0
N D:ALA178 4.5 49.9 1.0
C D:MSE177 4.5 47.2 1.0
CB D:PRO357 4.6 32.7 1.0
CG D:PRO357 4.6 36.3 1.0
CA D:PRO176 4.6 46.5 1.0
N D:LEU359 4.6 22.5 1.0
CG D:TYR356 4.6 49.9 1.0
O D:ARG355 4.7 42.0 1.0
OD2 D:ASP175 4.8 49.8 1.0
N D:TYR356 4.9 43.0 1.0
CB D:PRO176 4.9 44.8 1.0
C D:ALA358 5.0 26.2 1.0

Reference:

F.Forouhar, S.Lew, J.Seetharaman, M.Mao, R.Xiao, C.Ciccosanti, W.A.Buchwald, M.Maglaqui, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong. Northeast Structural Genomics Consortium Target CDR35 To Be Published.
Page generated: Fri Jul 11 07:29:34 2025

Last articles

Mg in 7QEN
Mg in 7QFN
Mg in 7QEK
Mg in 7QDX
Mg in 7QEJ
Mg in 7QC0
Mg in 7QBZ
Mg in 7Q8S
Mg in 7QBO
Mg in 7Q8C
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy