Chlorine in PDB 3m1y: Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori

The structure of Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori, PDB code: 3m1y was solved by B.Syed Ibrahim, S.K.Burley, S.Swaminathan, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.07 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.607, 84.719, 204.826, 90.00, 90.00, 90.00
R / Rfree (%)	22.9 / 27.1

The structure of Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori also contains other interesting chemical elements:

Magnesium

(Mg)

5 atoms

The binding sites of Chlorine atom in the Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori (pdb code 3m1y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori, PDB code: 3m1y:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl302 b:38.5 occ:1.00 O A:HOH323 2.8 35.1 1.0 N A:GLY97 3.2 25.7 1.0 NZ A:LYS141 3.2 20.1 1.0 O A:HOH322 3.3 34.4 1.0 OD1 A:ASN167 3.5 41.9 1.0 CA A:GLY97 3.6 24.5 1.0 OD1 A:ASP8 3.6 26.2 1.0 CE A:LYS141 3.9 20.9 1.0 C A:SER96 4.3 26.4 1.0 CG A:ASN167 4.4 41.8 1.0 C A:GLY97 4.4 25.1 1.0 CA A:SER96 4.6 24.6 1.0 CG A:ASP8 4.6 25.8 1.0 MG A:MG300 4.6 31.9 1.0 N A:GLY98 4.7 25.5 1.0 O A:HOH321 4.7 36.4 1.0 CB A:ASN167 4.8 38.5 1.0 CE1 A:PHE46 4.8 41.1 1.0 OD2 A:ASP10 4.8 30.8 1.0 OD2 A:ASP8 4.9 26.4 1.0 O A:HOH393 4.9 52.6 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:46.9 occ:1.00 N A:SER138 3.1 32.8 1.0 N A:HIS47 3.4 38.2 1.0 N A:PHE46 3.6 41.9 1.0 CA A:PHE137 3.7 31.4 1.0 CB A:PHE46 3.7 40.1 1.0 OG A:SER138 3.8 36.4 1.0 CB A:SER138 3.8 34.2 1.0 CB A:HIS47 3.9 35.4 1.0 C A:PHE137 3.9 31.5 1.0 OD2 A:ASP45 3.9 47.3 1.0 CA A:PHE46 4.0 39.8 1.0 CA A:SER138 4.1 34.9 1.0 CB A:PHE137 4.1 31.2 1.0 C A:PHE46 4.2 39.3 1.0 CA A:HIS47 4.2 37.0 1.0 CD1 A:PHE137 4.4 33.0 1.0 C A:ASP45 4.5 45.1 1.0 CD2 A:PHE46 4.7 40.3 1.0 CG A:PHE46 4.7 41.0 1.0 CA A:ASP45 4.7 47.3 1.0 CG A:PHE137 4.8 32.5 1.0 O A:MSE136 4.8 27.7 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl302 b:55.5 occ:1.00 N B:GLY97 2.9 29.4 1.0 O B:HOH324 3.1 28.4 1.0 O B:HOH343 3.1 42.5 1.0 NZ B:LYS141 3.2 32.4 1.0 ND2 B:ASN167 3.2 45.7 1.0 CA B:GLY97 3.3 27.7 1.0 CE B:LYS141 3.5 33.4 1.0 OD1 B:ASP8 3.8 31.7 1.0 C B:SER96 4.0 29.4 1.0 C B:GLY97 4.2 28.8 1.0 CG B:ASN167 4.2 48.2 1.0 O B:HOH405 4.2 50.2 1.0 CA B:SER96 4.4 28.7 1.0 N B:GLY98 4.5 28.0 1.0 CB B:ASN167 4.7 44.9 1.0 O B:HOH315 4.8 35.4 1.0 OG B:SER96 4.9 29.1 1.0 CD B:LYS141 4.9 31.1 1.0 CG B:ASP8 4.9 34.3 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl302 b:55.9 occ:1.00 NZ C:LYS141 2.9 25.3 1.0 N C:GLY97 3.0 25.1 1.0 CE C:LYS141 3.4 25.8 1.0 O C:HOH325 3.5 21.5 1.0 O C:HOH317 3.5 34.6 1.0 CA C:GLY97 3.6 24.6 1.0 OD1 C:ASP8 3.7 24.7 1.0 O C:HOH366 3.9 44.3 1.0 C C:SER96 4.1 25.1 1.0 CA C:SER96 4.3 23.7 1.0 ND2 C:ASN167 4.4 52.4 1.0 C C:GLY97 4.5 24.0 1.0 O C:HOH400 4.6 58.2 1.0 O C:HOH313 4.7 21.1 1.0 N C:GLY98 4.7 23.4 1.0 CD C:LYS141 4.7 23.5 1.0 CG C:ASN167 4.7 49.9 1.0 CG C:ASP8 4.8 24.2 1.0 OG C:SER96 4.8 22.5 1.0 OD2 C:ASP10 4.9 34.0 1.0 CB C:ASN167 4.9 44.1 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl302 b:55.2 occ:1.00 O D:HOH327 2.6 33.8 1.0 N D:GLY97 3.0 37.5 1.0 NZ D:LYS141 3.1 38.9 1.0 O D:HOH328 3.1 37.6 1.0 OD1 D:ASP8 3.5 43.0 1.0 CE D:LYS141 3.6 37.9 1.0 ND2 D:ASN167 3.7 60.6 1.0 CA D:GLY97 3.7 35.8 1.0 CA D:SER96 3.9 38.7 1.0 C D:SER96 4.0 38.6 1.0 OG D:SER96 4.1 40.5 1.0 N D:GLY98 4.4 34.7 1.0 OD2 D:ASP10 4.4 46.0 1.0 C D:GLY97 4.4 35.2 1.0 CG D:ASP8 4.5 41.3 1.0 CB D:SER96 4.6 39.3 1.0 CG D:ASN167 4.7 59.0 1.0 MG D:MG300 4.9 44.4 1.0 OD2 D:ASP8 4.9 42.7 1.0

B.Syed Ibrahim, S.K.Burley, S.Swaminathan. Crystal Structure of A Phosphoserine Phosphatase (Serb) From Helicobacter Pylori To Be Published.