Atomistry » Chlorine » PDB 3lz1-3m98 » 3m6y
Atomistry »
  Chlorine »
    PDB 3lz1-3m98 »
      3m6y »

Chlorine in PDB 3m6y: Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.

Enzymatic activity of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.

All present enzymatic activity of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.:
4.1.3.16;

Protein crystallography data

The structure of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution., PDB code: 3m6y was solved by E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, S.Clancy, A.Joachimiak, F.W.Anderson, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 88.05 / 1.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.679, 106.187, 88.205, 90.00, 90.95, 90.00
R / Rfree (%) 15.2 / 18

Other elements in 3m6y:

The structure of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. (pdb code 3m6y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution., PDB code: 3m6y:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3m6y

Go back to Chlorine Binding Sites List in 3m6y
Chlorine binding site 1 out of 6 in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl254

b:21.1
occ:1.00
 O A:HOH417 3.0 28.5 1.0
N A:LYS167 3.2 16.6 1.0
O A:HOH606 3.2 34.7 1.0
CA A:GLY193 3.4 11.5 1.0
C A:GLY193 3.4 12.0 1.0
CA A:LYS167 3.6 17.5 1.0
CB A:PRO165 3.6 14.9 1.0
N A:GLY194 3.7 11.3 1.0
O A:GLY193 3.8 13.2 1.0
CG A:LYS167 3.9 23.5 1.0
N A:MSE166 4.0 14.1 1.0
CA A:PRO165 4.1 14.0 1.0
C A:PRO165 4.2 15.2 1.0
O A:HOH1036 4.3 19.9 0.5
CB A:LYS167 4.3 18.7 1.0
C A:MSE166 4.4 15.9 1.0
CA A:GLY194 4.5 12.3 1.0
CA A:MSE166 4.7 15.1 0.5
CA A:MSE166 4.7 14.8 0.5
CE1 A:PHE164 4.8 18.1 1.0
N A:GLY193 4.8 10.2 1.0
O A:PRO165 4.8 16.8 1.0
C A:LYS167 4.8 17.4 1.0
CG A:PRO165 4.9 16.2 1.0
N A:GLY168 5.0 15.6 1.0

Chlorine binding site 2 out of 6 in 3m6y

Go back to Chlorine Binding Sites List in 3m6y
Chlorine binding site 2 out of 6 in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl255

b:24.9
occ:1.00
 O A:HOH272 2.8 24.4 1.0
O A:HOH630 3.3 32.9 1.0
ND2 A:ASN211 3.6 16.5 1.0
O A:ALA183 3.8 8.4 1.0
C A:ALA183 3.8 7.4 1.0
CB A:ALA183 3.8 8.1 1.0
N A:GLU184 4.0 8.2 1.0
CB A:ASN211 4.0 8.9 1.0
CA A:GLU184 4.1 8.7 1.0
CG A:GLU184 4.3 9.8 1.0
CG A:ASN211 4.4 12.5 1.0
CA A:ALA183 4.4 7.1 1.0
O A:ALA210 4.5 9.2 1.0
NZ A:LYS180 4.6 27.6 1.0
O A:HOH611 4.6 25.7 1.0
O A:HOH709 4.8 33.7 1.0
CB A:GLU184 4.8 9.4 1.0
CE A:LYS180 4.9 22.0 1.0
O A:ASN211 5.0 9.0 1.0
O A:HOH370 5.0 16.9 1.0

Chlorine binding site 3 out of 6 in 3m6y

Go back to Chlorine Binding Sites List in 3m6y
Chlorine binding site 3 out of 6 in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl254

b:19.0
occ:1.00
 O B:HOH655 3.0 28.0 1.0
N B:LEU70 3.2 11.6 1.0
NZ B:LYS162 3.4 16.9 1.0
N B:GLY71 3.5 19.0 1.0
N B:GLY73 3.6 22.3 1.0
CB B:LEU70 3.6 14.6 1.0
CB B:ASN94 3.7 9.3 1.0
CG B:ASN94 3.8 9.6 1.0
CA B:LEU70 3.9 14.4 1.0
O B:HOH406 4.0 35.1 1.0
N B:ALA72 4.0 23.3 1.0
CA B:GLY69 4.1 10.8 1.0
O B:HOH438 4.1 25.1 1.0
C B:GLY69 4.1 11.7 1.0
CG B:LEU70 4.1 15.8 1.0
CA B:GLY73 4.2 21.9 1.0
OD1 B:ASN94 4.2 10.5 1.0
CD1 B:LEU70 4.2 16.8 1.0
C B:LEU70 4.2 17.6 1.0
ND2 B:ASN94 4.2 9.3 1.0
CA B:GLY71 4.4 20.8 1.0
C B:GLY71 4.4 22.3 1.0
OH B:TYR220 4.5 18.2 1.0
C B:ALA72 4.6 23.6 1.0
CA B:ALA72 4.7 23.5 1.0
CE B:LYS162 4.8 17.4 1.0
O B:HOH1171 5.0 19.5 1.0

Chlorine binding site 4 out of 6 in 3m6y

Go back to Chlorine Binding Sites List in 3m6y
Chlorine binding site 4 out of 6 in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl255

b:17.6
occ:1.00
 O B:HOH394 3.1 26.9 1.0
N B:LYS167 3.3 12.1 1.0
C B:GLY193 3.3 10.9 1.0
CA B:GLY193 3.4 10.4 1.0
CB B:PRO165 3.6 11.9 1.0
N B:GLY194 3.6 10.9 1.0
CA B:LYS167 3.6 13.2 1.0
O B:GLY193 3.7 10.4 1.0
CG B:LYS167 4.0 20.1 1.0
N B:MSE166 4.0 10.6 1.0
CA B:PRO165 4.1 11.0 1.0
C B:PRO165 4.1 11.4 1.0
CA B:GLY194 4.3 11.2 1.0
CB B:LYS167 4.4 14.8 1.0
C B:MSE166 4.4 11.3 1.0
CE1 B:PHE164 4.7 12.1 1.0
N B:GLY193 4.8 9.7 1.0
O B:PRO165 4.8 12.3 1.0
CA B:MSE166 4.8 10.6 1.0
C B:LYS167 4.9 12.2 1.0
O B:HOH631 4.9 38.6 1.0
CG B:PRO165 4.9 13.4 1.0
O B:HOH586 4.9 26.4 1.0
N B:GLY168 5.0 11.4 1.0
O B:HOH260 5.0 25.6 1.0

Chlorine binding site 5 out of 6 in 3m6y

Go back to Chlorine Binding Sites List in 3m6y
Chlorine binding site 5 out of 6 in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl252

b:21.7
occ:1.00
 O C:HOH1091 2.9 32.3 1.0
O C:HOH1138 3.0 38.8 1.0
N C:LYS167 3.2 14.1 1.0
C C:GLY193 3.3 13.8 1.0
CA C:GLY193 3.3 13.0 1.0
CA C:LYS167 3.5 14.8 1.0
CB C:PRO165 3.6 11.7 1.0
N C:GLY194 3.6 14.7 1.0
O C:GLY193 3.7 13.7 1.0
CG C:LYS167 3.8 19.5 1.0
N C:MSE166 4.1 12.2 1.0
CA C:PRO165 4.1 11.5 1.0
C C:PRO165 4.1 11.4 1.0
CB C:LYS167 4.3 15.9 1.0
CA C:GLY194 4.3 14.7 1.0
C C:MSE166 4.4 13.8 1.0
CE1 C:PHE164 4.7 13.5 1.0
N C:GLY193 4.7 12.0 1.0
C C:LYS167 4.8 15.5 1.0
O C:HOH561 4.8 29.5 1.0
O C:PRO165 4.8 12.6 1.0
CA C:MSE166 4.8 11.5 1.0
N C:GLY168 4.9 16.0 1.0
CG C:PRO165 4.9 12.9 1.0

Chlorine binding site 6 out of 6 in 3m6y

Go back to Chlorine Binding Sites List in 3m6y
Chlorine binding site 6 out of 6 in the Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl252

b:16.7
occ:1.00
 O D:HOH889 2.9 25.5 1.0
O D:HOH888 3.1 39.0 1.0
O D:HOH1170 3.2 30.6 1.0
N D:LYS167 3.2 10.1 1.0
C D:GLY193 3.2 9.8 1.0
CA D:GLY193 3.3 9.0 1.0
CA D:LYS167 3.5 10.8 1.0
N D:GLY194 3.6 10.1 1.0
CB D:PRO165 3.6 9.1 1.0
O D:GLY193 3.6 9.8 1.0
CG D:LYS167 3.8 15.6 1.0
N D:MSE166 4.1 8.5 1.0
CA D:PRO165 4.1 8.2 1.0
C D:PRO165 4.2 8.0 1.0
CA D:GLY194 4.3 10.6 1.0
CB D:LYS167 4.3 12.3 1.0
C D:MSE166 4.4 9.6 1.0
CE1 D:PHE164 4.7 11.7 1.0
N D:GLY193 4.8 9.0 1.0
C D:LYS167 4.8 11.1 1.0
O D:PRO165 4.8 9.4 1.0
CA D:MSE166 4.8 9.3 1.0
O D:HOH898 4.9 26.9 1.0
N D:GLY168 4.9 9.7 1.0
O D:HOH748 4.9 30.2 1.0
CG D:PRO165 4.9 9.7 1.0
O D:HOH891 5.0 28.5 1.0

Reference:

E.V.Filippova, G.Minasov, L.Shuvalova, O.Kiryukhina, S.Clancy, A.Joachimiak, W.F.Anderson. Structure of 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus at 1.45 A Resolution. To Be Published.
Page generated: Fri Jul 11 07:47:01 2025

Last articles

Mg in 5E9G
Mg in 5E9T
Mg in 5E9F
Mg in 5E92
Mg in 5E95
Mg in 5E79
Mg in 5E6S
Mg in 5E75
Mg in 5E6U
Mg in 5E67
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy