Atomistry » Chlorine » PDB 3mmd-3mvt » 3mmd
Atomistry »
  Chlorine »
    PDB 3mmd-3mvt »
      3mmd »

Chlorine in PDB 3mmd: Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose

Enzymatic activity of Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose

All present enzymatic activity of Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose, PDB code: 3mmd was solved by V.Solomon, G.Zolotnitsky, H.Feinberg, O.Tabachnikov, Y.Shoham, G.Shoham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.84 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 123.241, 61.856, 89.066, 90.00, 119.20, 90.00
R / Rfree (%) 21.4 / 23.6

Other elements in 3mmd:

The structure of Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose (pdb code 3mmd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose, PDB code: 3mmd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3mmd

Go back to Chlorine Binding Sites List in 3mmd
Chlorine binding site 1 out of 2 in the Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl420

b:45.2
occ:1.00
NA A:NA411 2.1 17.3 1.0
O A:HOH680 2.8 26.6 1.0
OE2 A:GLU58 2.8 18.1 1.0
O3B A:XYP451 3.1 23.7 1.0
O A:HOH579 3.2 27.1 1.0
NE2 A:HIS322 3.4 23.9 1.0
CA A:TRP324 3.5 16.3 1.0
N A:TRP324 3.6 14.9 1.0
CE1 A:HIS322 3.6 24.9 1.0
CB A:TRP324 3.6 15.4 1.0
CD A:GLU58 3.7 19.0 1.0
OE1 A:GLU58 3.9 19.0 1.0
O A:HOH521 4.0 18.9 1.0
O A:HOH716 4.1 32.8 1.0
C3B A:XYP451 4.1 27.9 1.0
C A:THR323 4.1 15.2 1.0
O4B A:XYP451 4.1 27.7 1.0
CD2 A:HIS322 4.4 22.8 1.0
O A:THR323 4.5 13.0 1.0
ND1 A:HIS322 4.6 23.9 1.0
C4B A:XYP451 4.7 28.1 1.0
CA A:THR323 4.9 14.2 1.0
CG A:GLU58 5.0 16.1 1.0
C A:TRP324 5.0 15.6 1.0

Chlorine binding site 2 out of 2 in 3mmd

Go back to Chlorine Binding Sites List in 3mmd
Chlorine binding site 2 out of 2 in the Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the W241A Mutant of Xylanase From Geobacillus Stearothermophilus T-6 (XT6) Complexed with Hydrolyzed Xylopentaose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl421

b:37.2
occ:1.00
ZN A:ZN401 2.0 18.5 1.0
O A:HOH806 2.4 29.2 1.0
O A:HOH763 2.9 25.2 1.0
NE2 A:HIS11 3.2 17.4 1.0
OD2 A:ASP365 3.2 18.5 1.0
OD1 A:ASP365 3.5 18.2 1.0
CE1 A:HIS11 3.6 19.8 1.0
CG A:ASP365 3.6 19.7 1.0
CD2 A:HIS11 4.3 20.2 1.0
O A:HOH581 4.3 40.9 1.0
O A:HOH790 4.6 44.1 1.0
CE2 A:TYR281 4.7 22.9 1.0
CD A:PRO364 4.7 16.4 1.0
O A:HOH685 4.8 31.0 1.0
CG A:PRO364 4.8 16.2 1.0
ND1 A:HIS11 4.8 20.7 1.0
CB A:ASP365 4.8 18.3 1.0
O A:HOH713 5.0 27.9 1.0

Reference:

V.Solomon, G.Zolotnitsky, H.Feinberg, O.Tabachnikov, Y.Shoham, G.Shoham. Structural-Based Rational Mutagenesis of Xylanases From G.Stearothermophilus To Be Published.
Page generated: Fri Jul 11 07:54:46 2025

Last articles

Fe in 6O7O
Fe in 6O7N
Fe in 6O7M
Fe in 6O7L
Fe in 6O5Y
Fe in 6O6M
Fe in 6O6L
Fe in 6O0B
Fe in 6O3I
Fe in 6NY6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy