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Chlorine in PDB 3np9: Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene

Enzymatic activity of Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene

All present enzymatic activity of Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene:
2.4.1.1;

Protein crystallography data

The structure of Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene, PDB code: 3np9 was solved by K.-M.Alexacou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 127.910, 127.910, 115.631, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 21.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene (pdb code 3np9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene, PDB code: 3np9:

Chlorine binding site 1 out of 1 in 3np9

Go back to Chlorine Binding Sites List in 3np9
Chlorine binding site 1 out of 1 in the Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glycogen Phosphorylase Complexed with 3-(Beta-D-Glucopyranosyl)-2- Hydroxy-5-Methoxy-Chlorobenzene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl998

b:16.2
occ:1.00
 CL6 A:Z2T998 0.0 16.2 1.0
C6 A:Z2T998 1.7 15.1 1.0
C1 A:Z2T998 2.7 14.7 1.0
C5 A:Z2T998 2.7 14.4 1.0
O1 A:Z2T998 2.9 14.8 1.0
O A:HOH918 3.2 14.0 1.0
OD1 A:ASP283 3.4 18.9 1.0
N A:ASN284 3.6 19.3 1.0
O A:HOH1145 3.7 28.0 1.0
O A:HOH1086 3.8 37.5 1.0
CA A:ASP283 3.9 18.6 1.0
OE1 A:GLU88 3.9 15.8 1.0
C2 A:Z2T998 4.0 14.3 1.0
C4 A:Z2T998 4.0 14.8 1.0
O A:ASN282 4.0 18.1 1.0
CG A:ASP283 4.0 19.0 1.0
CB A:LEU136 4.1 13.9 1.0
OE2 A:GLU88 4.2 14.7 1.0
C A:ASP283 4.2 18.7 1.0
CB A:ASN133 4.3 12.5 1.0
CD A:GLU88 4.4 13.9 1.0
CB A:ASP283 4.5 18.4 1.0
C3 A:Z2T998 4.5 14.7 1.0
CA A:ASN284 4.6 19.9 1.0
CD2 A:LEU136 4.7 16.1 1.0
CD1 A:LEU136 4.7 15.1 1.0
CG A:LEU136 4.7 14.1 1.0
OD2 A:ASP283 4.8 21.1 1.0
ND2 A:ASN133 4.9 11.3 1.0
C A:ASN282 4.9 17.9 1.0
N A:ASP283 4.9 18.1 1.0
O A:HOH1038 5.0 30.4 1.0

Reference:

K.M.Alexacou, Y.Z.Zhang, J.P.Praly, S.E.Zographos, E.D.Chrysina, N.G.Oikonomakos, D.D.Leonidas. Halogen-Substituted (C-Beta-D-Glucopyranosyl)-Hydroquinone Regioisomers: Synthesis, Enzymatic Evaluation and Their Binding to Glycogen Phosphorylase. Bioorg.Med.Chem. V. 19 5125 2011.
ISSN: ISSN 0968-0896
PubMed: 21821421
DOI: 10.1016/J.BMC.2011.07.024
Page generated: Fri Jul 11 08:23:50 2025

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