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Chlorine in PDB 3npf: Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution, PDB code: 3npf was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.87 / 1.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.136, 62.495, 156.809, 90.00, 90.00, 90.00
R / Rfree (%) 14.1 / 17.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution (pdb code 3npf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution, PDB code: 3npf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3npf

Go back to Chlorine Binding Sites List in 3npf
Chlorine binding site 1 out of 2 in the Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl327

b:12.8
occ:1.00
O A:HOH460 3.0 17.1 1.0
NH2 A:ARG44 3.2 10.6 1.0
ND2 A:ASN42 3.3 9.0 1.0
N B:TRP193 3.3 10.0 1.0
NE A:ARG44 3.7 10.2 1.0
CE1 A:PHE49 3.8 16.7 1.0
CD1 B:TYR191 3.8 11.6 1.0
CA B:LEU192 3.8 8.0 1.0
CD1 A:PHE49 3.9 15.3 1.0
CB A:ASN42 3.9 9.3 1.0
O B:HOH498 3.9 19.9 1.0
CZ A:ARG44 4.0 12.7 1.0
CE1 B:TYR191 4.0 12.4 1.0
CG A:ASN42 4.0 10.5 1.0
C B:LEU192 4.1 8.9 1.0
O B:TYR191 4.1 11.5 1.0
CB B:TRP193 4.1 9.1 1.0
O A:HOH404 4.3 14.2 1.0
CA B:TRP193 4.3 9.3 1.0
CD1 B:LEU192 4.4 12.1 1.0
N B:LEU192 4.5 9.1 1.0
C B:TYR191 4.6 11.1 1.0
O B:HOH347 4.8 10.2 1.0
O A:HOH351 4.8 10.1 1.0
O A:ASN42 4.9 12.2 1.0
CB B:LEU192 5.0 8.5 1.0
CD A:ARG44 5.0 13.5 1.0

Chlorine binding site 2 out of 2 in 3npf

Go back to Chlorine Binding Sites List in 3npf
Chlorine binding site 2 out of 2 in the Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Dipeptidyl-Peptidase VI (BACOVA_00612) From Bacteroides Ovatus at 1.72 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl328

b:12.3
occ:1.00
O B:HOH478 3.0 18.5 1.0
NH2 B:ARG44 3.2 11.6 1.0
ND2 B:ASN42 3.3 9.7 1.0
N A:TRP193 3.4 8.8 1.0
NE B:ARG44 3.7 11.4 1.0
CD1 A:TYR191 3.8 11.4 1.0
CB B:ASN42 3.9 9.6 1.0
CA A:LEU192 3.9 8.3 1.0
CE1 B:PHE49 3.9 17.4 1.0
CZ B:ARG44 3.9 10.9 1.0
CD1 B:PHE49 3.9 17.1 1.0
CE1 A:TYR191 3.9 12.6 1.0
O A:HOH479 4.0 18.9 1.0
CG B:ASN42 4.1 8.8 1.0
CB A:TRP193 4.1 11.5 1.0
O A:TYR191 4.1 9.2 1.0
C A:LEU192 4.1 9.8 1.0
CA A:TRP193 4.3 9.6 1.0
O B:HOH416 4.4 14.7 1.0
CD1 A:LEU192 4.4 10.1 1.0
N A:LEU192 4.6 9.7 1.0
C A:TYR191 4.6 9.6 1.0
O A:HOH345 4.7 9.6 1.0
O B:HOH366 4.8 11.1 1.0
CB A:LEU192 4.9 8.2 1.0
CD B:ARG44 4.9 11.3 1.0
O B:ASN42 5.0 11.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 08:24:06 2025

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