Atomistry » Chlorine » PDB 3nnx-3nw8 » 3nvs
Atomistry »
  Chlorine »
    PDB 3nnx-3nw8 »
      3nvs »

Chlorine in PDB 3nvs: 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate

Enzymatic activity of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate

All present enzymatic activity of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate:
2.5.1.19;

Protein crystallography data

The structure of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate, PDB code: 3nvs was solved by G.Minasov, S.H.Light, A.Halavaty, G.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.89 / 1.02
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.866, 87.484, 49.994, 90.00, 105.26, 90.00
R / Rfree (%) 11.4 / 13.8

Other elements in 3nvs:

The structure of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate (pdb code 3nvs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate, PDB code: 3nvs:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3nvs

Go back to Chlorine Binding Sites List in 3nvs
Chlorine binding site 1 out of 4 in the 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl433

b:9.6
occ:1.00
 O A:HOH1136 3.1 17.9 0.7
O A:HOH1136 3.2 19.9 0.3
NE A:ARG354 3.3 8.6 1.0
N A:VAL360 3.4 7.8 1.0
O A:VAL360 3.7 8.9 1.0
CD A:ARG354 3.7 9.0 1.0
CA A:THR359 3.8 8.5 1.0
CG A:ARG354 4.1 7.7 1.0
C A:THR359 4.1 8.8 1.0
CB A:THR359 4.2 10.4 1.0
CZ A:ARG354 4.2 9.5 1.0
CG2 A:THR359 4.3 11.8 1.0
CA A:VAL360 4.4 8.1 1.0
NH2 A:ARG354 4.4 10.6 1.0
C A:VAL360 4.4 7.8 1.0
O A:ALA358 4.7 8.4 1.0
CB A:VAL360 4.9 8.4 1.0

Chlorine binding site 2 out of 4 in 3nvs

Go back to Chlorine Binding Sites List in 3nvs
Chlorine binding site 2 out of 4 in the 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl434

b:14.2
occ:0.75
 NZ A:LYS420 3.0 24.0 1.0
NE2 A:GLN423 3.2 8.0 0.3
N A:ASN17 3.2 9.5 0.3
N A:ASN17 3.2 9.3 0.7
O A:HOH647 3.4 24.1 0.7
OE1 A:GLN423 3.8 25.1 0.7
CB A:ASN17 3.9 12.0 0.7
CA A:VAL16 3.9 10.0 1.0
CB A:ASN17 3.9 10.7 0.3
ND2 A:ASN17 3.9 14.8 0.3
CE A:LYS420 3.9 18.8 1.0
CG A:ASN17 4.0 12.5 0.3
O A:HOH697 4.1 31.8 1.0
C A:VAL16 4.1 9.3 1.0
O A:GLU15 4.1 15.1 1.0
CD A:GLN423 4.1 9.9 0.3
CA A:ASN17 4.1 9.6 0.3
OE1 A:GLN423 4.1 12.2 0.3
CA A:ASN17 4.1 9.8 0.7
O A:HOH508 4.1 37.8 1.0
CD A:LYS420 4.2 14.3 1.0
O A:ASN17 4.3 9.9 0.3
O A:ASN17 4.4 10.3 0.7
CG1 A:VAL16 4.6 12.0 1.0
OD1 A:ASN17 4.7 14.2 0.3
C A:ASN17 4.7 9.0 0.3
C A:ASN17 4.7 8.7 0.7
CB A:VAL16 4.8 10.7 1.0
N A:VAL16 4.8 11.0 1.0
C A:GLU15 4.8 11.7 1.0
CD A:GLN423 4.9 23.0 0.7

Chlorine binding site 3 out of 4 in 3nvs

Go back to Chlorine Binding Sites List in 3nvs
Chlorine binding site 3 out of 4 in the 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl435

b:16.6
occ:0.75
 O A:HOH579 2.9 27.3 1.0
N A:ALA379 3.2 7.3 1.0
CA A:ALA378 3.6 7.7 1.0
CB A:ALA378 3.9 9.7 1.0
C A:ALA378 3.9 6.5 1.0
CB A:ALA379 4.1 8.8 1.0
CA A:ALA379 4.2 7.3 1.0
O A:ALA379 4.3 7.7 1.0
CE A:LYS355 4.5 8.8 1.0
C A:ALA379 4.6 7.3 1.0
O A:HIS377 4.7 8.6 1.0
O A:HOH948 4.7 20.1 1.0
O A:HOH858 4.8 12.1 1.0
N A:ALA378 4.9 7.0 1.0
NZ A:LYS355 5.0 8.3 1.0

Chlorine binding site 4 out of 4 in 3nvs

Go back to Chlorine Binding Sites List in 3nvs
Chlorine binding site 4 out of 4 in the 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl436

b:16.1
occ:0.75
 N A:GLU362 3.0 9.3 1.0
O A:HOH973 3.3 23.8 1.0
NH2 A:ARG354 3.4 10.6 1.0
O A:HOH880 3.8 16.5 1.0
CA A:GLU361 3.8 9.1 1.0
O A:GLU362 3.8 12.3 1.0
CB A:GLU362 3.8 9.9 1.0
CA A:GLU362 3.9 9.2 1.0
C A:GLU361 3.9 9.0 1.0
O A:VAL360 3.9 8.9 1.0
C A:GLU362 4.2 9.4 1.0
CG A:GLU361 4.5 11.3 1.0
CZ A:ARG354 4.7 9.5 1.0
CB A:GLU361 4.7 9.7 1.0
C A:VAL360 4.7 7.8 1.0
N A:GLU361 4.8 7.9 1.0

Reference:

G.Minasov, S.H.Light, A.Halavaty, G.Shuvalova, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1-Carboxyvinyltransferase From Vibrio Cholerae in Complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate To Be Published.
Page generated: Sun Jul 21 01:16:41 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy