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Chlorine in PDB 3nwb: Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group

Enzymatic activity of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group

All present enzymatic activity of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group:
2.1.1.6;

Protein crystallography data

The structure of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group, PDB code: 3nwb was solved by A.Ehler, D.Schlatter, M.Stihle, J.Benz, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.42 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.389, 55.351, 79.356, 90.00, 90.00, 90.00
R / Rfree (%) 13.2 / 16.4

Other elements in 3nwb:

The structure of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group (pdb code 3nwb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group, PDB code: 3nwb:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3nwb

Go back to Chlorine Binding Sites List in 3nwb
Chlorine binding site 1 out of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl223

b:16.1
occ:1.00
H A:SER72 2.6 17.6 0.5
H A:SER72 2.6 17.6 0.5
H A:VAL42 2.6 15.7 0.5
H A:VAL42 2.6 15.7 0.5
HB3 A:TYR71 2.8 16.9 1.0
HA A:ASN41 2.8 16.4 1.0
HG13 A:VAL42 2.8 18.4 0.5
HB3 A:SER72 3.1 19.4 0.5
O A:HOH275 3.1 22.3 1.0
O A:HOH236 3.1 15.3 1.0
HG A:SER72 3.2 21.1 0.5
OG A:SER72 3.2 17.6 0.5
HB2 A:SER72 3.3 19.7 0.5
N A:SER72 3.3 14.7 1.0
N A:VAL42 3.4 13.1 1.0
HG12 A:VAL42 3.4 21.2 0.5
HD1 A:TYR71 3.5 16.8 1.0
OG A:SER72 3.5 17.1 0.5
HD21 A:ASN41 3.6 20.9 1.0
CA A:ASN41 3.6 13.7 1.0
CB A:SER72 3.7 16.1 0.5
CB A:SER72 3.7 16.4 0.5
HG A:SER72 3.7 20.5 0.5
HB3 A:ASN41 3.7 19.1 1.0
CB A:TYR71 3.7 14.1 1.0
CG1 A:VAL42 3.8 15.4 0.5
HB A:VAL42 3.8 18.3 0.5
H A:TYR71 3.9 16.4 1.0
C A:ASN41 4.0 13.2 1.0
HG22 A:VAL42 4.0 21.5 0.5
CA A:SER72 4.1 15.0 0.5
CA A:SER72 4.1 15.1 0.5
OD2 A:ASP141 4.1 13.0 1.0
HB3 A:TYR68 4.1 17.5 1.0
CB A:ASN41 4.2 15.9 1.0
HG12 A:VAL42 4.2 18.4 0.5
O A:HOH242 4.2 19.7 1.0
CD1 A:TYR71 4.2 14.0 1.0
C A:TYR71 4.2 14.8 1.0
CG1 A:VAL42 4.2 17.7 0.5
HG11 A:VAL42 4.2 18.4 0.5
HB2 A:TYR71 4.3 16.9 1.0
N A:TYR71 4.3 13.6 1.0
CA A:TYR71 4.3 15.0 1.0
O A:ALA67 4.3 15.2 1.0
CB A:VAL42 4.3 15.3 0.5
O A:HOH336 4.4 12.6 1.0
ND2 A:ASN41 4.4 17.4 1.0
HD2 A:TYR68 4.4 18.4 1.0
CG A:TYR71 4.4 13.8 1.0
CA A:VAL42 4.5 13.1 0.5
HA A:SER72 4.5 18.1 0.5
HA A:SER72 4.5 18.0 0.5
CA A:VAL42 4.5 13.2 0.5
O A:MET40 4.5 14.1 1.0
CB A:VAL42 4.5 15.6 0.5
HB2 A:SER72 4.5 19.4 0.5
HB3 A:SER72 4.6 19.7 0.5
HG11 A:VAL42 4.6 21.2 0.5
CG2 A:VAL42 4.7 17.9 0.5
HE2 A:PHE139 4.7 18.1 1.0
N A:ASN41 4.8 13.4 1.0
H A:GLY70 4.8 17.9 1.0
CG A:ASN41 4.8 17.6 1.0
HA A:VAL42 4.9 15.8 0.5
HA A:VAL42 4.9 15.9 0.5
H A:CYS69 4.9 17.8 1.0
HB2 A:ASN41 5.0 19.1 1.0
HG13 A:VAL42 5.0 21.2 0.5

Chlorine binding site 2 out of 3 in 3nwb

Go back to Chlorine Binding Sites List in 3nwb
Chlorine binding site 2 out of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl224

b:18.7
occ:1.00
H A:TYR200 2.5 15.7 1.0
H A:ALA45 2.7 18.5 1.0
H A:ASP44 2.8 17.8 1.0
O A:HOH348 3.1 34.6 1.0
HA A:GLU199 3.1 14.2 1.0
O A:HOH269 3.2 21.8 1.0
N A:TYR200 3.3 13.1 1.0
N A:ASP44 3.4 14.8 1.0
HB3 A:ASP44 3.4 22.6 1.0
N A:ALA45 3.5 15.4 1.0
HA3 A:GLY43 3.5 16.3 1.0
HA A:TYR200 3.7 16.6 1.0
HB2 A:ALA45 3.7 20.1 1.0
O A:HOH234 3.7 13.5 1.0
HD1 A:TYR200 3.7 20.0 1.0
HB3 A:ALA45 3.8 20.1 1.0
CA A:GLU199 4.0 11.8 1.0
CD1 A:TYR200 4.0 16.7 1.0
CA A:ASP44 4.1 15.4 1.0
CA A:TYR200 4.1 13.8 1.0
CB A:ALA45 4.1 16.7 1.0
C A:GLY43 4.1 13.7 1.0
CB A:ASP44 4.2 18.8 1.0
C A:GLU199 4.2 11.4 1.0
CA A:GLY43 4.2 13.6 1.0
C A:ASP44 4.3 14.8 1.0
HE1 A:TYR200 4.3 21.4 1.0
HA2 A:GLY43 4.3 16.3 1.0
CE1 A:TYR200 4.3 17.8 1.0
CA A:ALA45 4.4 14.9 1.0
HB2 A:ASP44 4.5 22.6 1.0
HB2 A:GLU199 4.5 14.6 1.0
CG A:TYR200 4.7 15.4 1.0
O A:LEU198 4.7 12.0 1.0
O A:HOH423 4.7 46.8 1.0
H A:MET201 4.7 15.8 0.8
H A:MET201 4.7 15.8 0.2
CB A:GLU199 4.8 12.2 1.0
HB3 A:GLU199 4.8 14.6 1.0
H A:LYS46 4.9 14.8 1.0
O A:HOH295 4.9 31.2 1.0
O A:HOH350 5.0 30.7 1.0
HA A:ALA45 5.0 17.9 1.0
N A:GLU199 5.0 11.7 1.0

Chlorine binding site 3 out of 3 in 3nwb

Go back to Chlorine Binding Sites List in 3nwb
Chlorine binding site 3 out of 3 in the Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Rat Comt in Complex with A Fluorinated Desoxyribose-Containing Bisubstrate Inhibitor Avoids Hydroxyl Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl225

b:61.8
occ:1.00
H A:GLY83 2.8 43.9 1.0
HH22 A:ARG85 2.9 40.9 1.0
HH12 A:ARG85 3.0 39.2 1.0
N A:GLY83 3.6 36.6 1.0
HZ3 A:LYS111 3.6 41.4 1.0
HA A:PRO82 3.7 46.2 1.0
NH2 A:ARG85 3.7 34.0 1.0
NH1 A:ARG85 3.8 32.6 1.0
HA2 A:GLY83 3.9 41.9 1.0
HB3 A:PRO82 4.0 47.2 1.0
HZ1 A:LYS111 4.1 41.4 1.0
NZ A:LYS111 4.3 34.5 1.0
CZ A:ARG85 4.3 32.1 1.0
CA A:GLY83 4.3 34.9 1.0
CA A:PRO82 4.4 38.5 1.0
HH21 A:ARG85 4.4 40.9 1.0
C A:PRO82 4.4 38.4 1.0
HH11 A:ARG85 4.5 39.2 1.0
HG2 A:LYS111 4.6 32.5 1.0
CB A:PRO82 4.7 39.3 1.0
HE2 A:LYS111 4.8 39.0 1.0
HZ2 A:LYS111 4.9 41.4 1.0
HA3 A:GLY83 4.9 41.9 1.0
HG3 A:LYS111 5.0 32.5 1.0

Reference:

M.Ellermann, C.Lerner, G.Burgy, A.Ehler, C.Bissantz, R.Jakob-Roetne, R.Paulini, O.Allemann, H.Tissot, D.Grunstein, M.Stihle, F.Diederich, M.G.Rudolph. Catechol-O-Methyltransferase in Complex with Substituted 3'-Deoxyribose Bisubstrate Inhibitors Acta Crystallogr.,Sect.D V. 68 253 2012.
ISSN: ISSN 0907-4449
PubMed: 22349227
DOI: 10.1107/S0907444912001138
Page generated: Fri Jul 11 08:30:18 2025

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