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Chlorine in PDB 3odg: Crystal Structure of Xanthosine Phosphorylase Bound with Xanthine From Yersinia Pseudotuberculosis

Protein crystallography data

The structure of Crystal Structure of Xanthosine Phosphorylase Bound with Xanthine From Yersinia Pseudotuberculosis, PDB code: 3odg was solved by J.Kim, U.A.Ramagopal, S.K.Burley, S.C.Almo, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.24 / 1.64
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 96.470, 96.470, 48.906, 90.00, 90.00, 120.00
R / Rfree (%) 15.5 / 18.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Xanthosine Phosphorylase Bound with Xanthine From Yersinia Pseudotuberculosis (pdb code 3odg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Xanthosine Phosphorylase Bound with Xanthine From Yersinia Pseudotuberculosis, PDB code: 3odg:

Chlorine binding site 1 out of 1 in 3odg

Go back to Chlorine Binding Sites List in 3odg
Chlorine binding site 1 out of 1 in the Crystal Structure of Xanthosine Phosphorylase Bound with Xanthine From Yersinia Pseudotuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Xanthosine Phosphorylase Bound with Xanthine From Yersinia Pseudotuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl289

b:26.8
occ:1.00
O A:HOH348 2.8 30.5 1.0
O A:HOH469 3.0 37.8 1.0
O A:HOH433 3.0 32.6 1.0
N A:ALA125 3.2 18.5 1.0
N A:SER42 3.3 28.3 1.0
CA A:ASN124 3.7 16.2 1.0
CA A:GLY41 3.7 24.1 1.0
C A:ASN124 3.9 18.0 1.0
OG A:SER42 3.9 33.2 1.0
NH1 A:ARG93 4.0 18.2 1.0
CB A:ALA125 4.0 21.8 1.0
CB A:ASN124 4.0 16.0 1.0
C A:GLY41 4.1 27.3 1.0
CA A:ALA125 4.1 19.7 1.0
CB A:SER42 4.2 30.1 1.0
O A:ALA125 4.3 22.2 1.0
CA A:SER42 4.4 28.2 1.0
C A:ALA125 4.7 19.6 1.0
OG A:SER224 4.8 19.8 1.0
O A:HOH539 4.8 27.0 1.0
N A:ASN124 4.9 17.1 1.0
O A:HOH392 5.0 35.9 1.0
O A:THR123 5.0 16.9 1.0

Reference:

J.Kim, U.A.Ramagopal, S.C.Almo. Crystal Structure of Xanthosine Phosphorylase Bound with Xanthine From Yersinia Pseudotuberculosis To Be Published.
Page generated: Sun Jul 21 01:37:15 2024

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