Chlorine in PDB 3omc: Structure of Human SND1 Extended Tudor Domain in Complex with the Symmetrically Dimethylated Arginine PIWIL1 Peptide R4ME2S

The structure of Structure of Human SND1 Extended Tudor Domain in Complex with the Symmetrically Dimethylated Arginine PIWIL1 Peptide R4ME2S, PDB code: 3omc was solved by R.Lam, K.Liu, Y.H.Guo, C.B.Bian, C.Xu, F.Mackenzie, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.05 / 1.77
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.622, 75.834, 80.177, 90.00, 90.37, 90.00
R / Rfree (%)	17.9 / 21.3

The binding sites of Chlorine atom in the Structure of Human SND1 Extended Tudor Domain in Complex with the Symmetrically Dimethylated Arginine PIWIL1 Peptide R4ME2S (pdb code 3omc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Human SND1 Extended Tudor Domain in Complex with the Symmetrically Dimethylated Arginine PIWIL1 Peptide R4ME2S, PDB code: 3omc:

Chlorine binding site 1 out of 1 in the Structure of Human SND1 Extended Tudor Domain in Complex with the Symmetrically Dimethylated Arginine PIWIL1 Peptide R4ME2S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human SND1 Extended Tudor Domain in Complex with the Symmetrically Dimethylated Arginine PIWIL1 Peptide R4ME2S within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1000 b:32.2 occ:1.00 O B:HOH77 3.2 23.7 1.0 N B:THR779 3.2 23.9 1.0 OG1 B:THR779 3.2 32.8 1.0 CA B:PRO723 3.5 29.6 1.0 CB B:THR779 3.8 27.1 1.0 CB B:PRO723 3.8 29.6 1.0 CA B:GLY778 3.9 22.6 1.0 CG B:PRO723 4.0 31.3 1.0 C B:GLY778 4.0 22.2 1.0 CB B:TYR728 4.0 19.6 1.0 CA B:THR779 4.1 23.3 1.0 CD1 B:TYR728 4.2 23.3 1.0 CG B:TYR728 4.2 21.1 1.0 N B:PRO723 4.2 32.2 1.0 N B:VAL724 4.5 28.3 1.0 C B:PRO723 4.6 28.9 1.0 CD B:PRO723 4.7 31.1 1.0 C B:PRO722 4.9 33.3 1.0 O B:SER727 4.9 21.0 1.0 O B:PRO722 4.9 35.4 1.0 CE1 B:TYR728 5.0 23.1 1.0

K.Liu, C.Chen, Y.Guo, R.Lam, C.Bian, C.Xu, D.Y.Zhao, J.Jin, F.Mackenzie, T.Pawson, J.Min. Structural Basis For Recognition of Arginine Methylated Piwi Proteins By the Extended Tudor Domain. Proc.Natl.Acad.Sci.Usa V. 107 18398 2010.
ISSN: ISSN 0027-8424
PubMed: 20937909
DOI: 10.1073/PNAS.1013106107