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Chlorine in PDB 3org: Crystal Structure of A Eukaryotic Clc Transporter

Protein crystallography data

The structure of Crystal Structure of A Eukaryotic Clc Transporter, PDB code: 3org was solved by L.Feng, R.Mackinnon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.66 / 3.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 229.629, 178.270, 145.135, 90.00, 129.21, 90.00
R / Rfree (%) 25.9 / 28.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Eukaryotic Clc Transporter (pdb code 3org). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of A Eukaryotic Clc Transporter, PDB code: 3org:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3org

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Chlorine binding site 1 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl801

b:99.5
occ:1.00
 N A:SER165 2.9 99.8 1.0
CD2 A:LEU518 3.4 97.9 1.0
CB A:SER165 3.5 95.8 1.0
CA A:GLY164 3.7 0.2 1.0
C A:GLY164 3.8 0.9 1.0
CA A:SER165 3.8 97.6 1.0
CD1 A:LEU518 3.8 94.0 1.0
CG A:LEU518 4.1 95.9 1.0
CG A:PRO168 4.3 93.0 1.0
CB A:LEU518 4.6 94.9 1.0
N A:GLY166 4.7 95.6 1.0
O A:ILE421 4.7 0.4 1.0
CB A:PRO168 4.8 93.1 1.0
C A:SER165 4.8 96.6 1.0
OG A:SER165 4.8 94.0 1.0
CD A:PRO168 4.9 91.7 1.0
O A:GLY164 5.0 0.2 1.0
N A:GLY164 5.0 0.2 1.0

Chlorine binding site 2 out of 8 in 3org

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Chlorine binding site 2 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl802

b:0.7
occ:1.00
 N A:TRP209 3.0 0.6 1.0
N A:GLU210 3.2 95.7 1.0
CD1 A:TRP209 3.2 0.1 1.0
N A:VAL431 3.3 0.1 1.0
CA A:GLY208 3.6 0.3 1.0
CB A:VAL431 3.7 0.9 1.0
CG2 A:VAL431 3.7 0.3 1.0
CG A:GLU210 3.8 93.7 1.0
CB A:GLU210 3.8 92.3 1.0
C A:GLY208 3.8 0.3 1.0
CB A:PHE430 3.8 94.2 1.0
CA A:TRP209 4.0 99.8 1.0
N A:PHE430 4.0 96.7 1.0
CA A:GLU210 4.0 93.2 1.0
NE1 A:TRP209 4.0 0.6 1.0
C A:TRP209 4.0 97.1 1.0
CA A:VAL431 4.1 0.9 1.0
CA A:PHE430 4.2 96.2 1.0
CG A:TRP209 4.2 0.3 1.0
C A:PHE430 4.3 98.7 1.0
CD A:PRO432 4.5 0.2 1.0
CB A:TRP209 4.6 0.6 1.0
N A:VAL429 4.9 97.5 1.0
CG A:PHE430 4.9 93.5 1.0

Chlorine binding site 3 out of 8 in 3org

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Chlorine binding site 3 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl801

b:0.8
occ:1.00
 N B:SER165 2.9 99.8 1.0
CD2 B:LEU518 3.3 96.9 1.0
CB B:SER165 3.5 95.9 1.0
CA B:GLY164 3.7 0.1 1.0
C B:GLY164 3.8 0.8 1.0
CA B:SER165 3.8 97.6 1.0
CD1 B:LEU518 3.9 93.3 1.0
CG B:LEU518 4.1 95.3 1.0
CG B:PRO168 4.2 93.1 1.0
CB B:LEU518 4.6 94.6 1.0
N B:GLY166 4.6 95.7 1.0
CB B:PRO168 4.8 93.2 1.0
C B:SER165 4.8 96.6 1.0
O B:ILE421 4.8 0.0 1.0
CD B:PRO168 4.8 91.8 1.0
OG B:SER165 4.9 94.2 1.0
O B:GLY164 5.0 0.1 1.0

Chlorine binding site 4 out of 8 in 3org

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Chlorine binding site 4 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl802

b:99.0
occ:1.00
 N B:TRP209 3.1 98.8 1.0
N B:GLU210 3.2 94.7 1.0
N B:VAL431 3.3 99.1 1.0
CD1 B:TRP209 3.3 97.9 1.0
CG2 B:VAL431 3.5 0.9 1.0
CB B:GLU210 3.7 91.7 1.0
CG B:GLU210 3.7 92.7 1.0
CB B:PHE430 3.7 93.5 1.0
CB B:VAL431 3.7 0.8 1.0
CA B:GLY208 3.8 0.4 1.0
N B:PHE430 3.9 95.9 1.0
CA B:GLU210 3.9 92.4 1.0
C B:GLY208 4.0 0.4 1.0
CA B:TRP209 4.1 98.3 1.0
NE1 B:TRP209 4.1 98.1 1.0
C B:TRP209 4.1 95.8 1.0
CA B:PHE430 4.1 95.4 1.0
CA B:VAL431 4.1 0.8 1.0
C B:PHE430 4.2 97.8 1.0
CG B:TRP209 4.3 99.4 1.0
CD B:PRO432 4.5 0.9 1.0
CB B:TRP209 4.7 0.1 1.0
CG B:PHE430 4.8 92.6 1.0
N B:VAL429 4.9 97.0 1.0
CD2 B:PHE430 4.9 94.0 1.0
C B:VAL429 5.0 97.2 1.0

Chlorine binding site 5 out of 8 in 3org

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Chlorine binding site 5 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl801

b:1.0
occ:1.00
 N C:SER165 3.0 0.4 1.0
CD2 C:LEU518 3.5 98.3 1.0
CB C:SER165 3.5 96.7 1.0
CA C:GLY164 3.8 0.4 1.0
CA C:SER165 3.9 98.3 1.0
C C:GLY164 3.9 0.3 1.0
CD1 C:LEU518 4.0 95.0 1.0
CG C:LEU518 4.2 96.6 1.0
CG C:PRO168 4.2 93.9 1.0
CB C:LEU518 4.5 95.9 1.0
N C:GLY166 4.7 96.5 1.0
O C:ILE421 4.7 0.1 1.0
CB C:PRO168 4.8 93.9 1.0
C C:SER165 4.8 97.3 1.0
OG C:SER165 4.8 95.6 1.0
CD C:PRO168 4.9 92.6 1.0

Chlorine binding site 6 out of 8 in 3org

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Chlorine binding site 6 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl802

b:95.9
occ:1.00
 N C:TRP209 3.1 0.3 1.0
N C:VAL431 3.2 99.9 1.0
N C:GLU210 3.3 96.1 1.0
CD1 C:TRP209 3.4 99.3 1.0
CA C:GLY208 3.6 0.5 1.0
CG2 C:VAL431 3.6 0.1 1.0
CG C:GLU210 3.6 95.0 1.0
CB C:VAL431 3.7 0.5 1.0
CB C:GLU210 3.7 93.2 1.0
CB C:PHE430 3.8 94.3 1.0
N C:PHE430 3.8 96.8 1.0
C C:GLY208 3.8 0.9 1.0
CA C:GLU210 4.0 94.0 1.0
CA C:VAL431 4.0 0.5 1.0
CA C:PHE430 4.0 96.3 1.0
CA C:TRP209 4.0 99.8 1.0
C C:TRP209 4.1 97.3 1.0
C C:PHE430 4.1 98.6 1.0
NE1 C:TRP209 4.2 99.9 1.0
CG C:TRP209 4.4 0.8 1.0
CD C:PRO432 4.4 0.6 1.0
CB C:TRP209 4.7 0.5 1.0
N C:VAL429 4.8 98.2 1.0
C C:VAL429 4.8 98.2 1.0
CG C:PHE430 4.9 93.4 1.0
N C:GLY208 5.0 0.0 1.0

Chlorine binding site 7 out of 8 in 3org

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Chlorine binding site 7 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl801

b:97.5
occ:1.00
 N D:SER165 3.0 99.2 1.0
CB D:SER165 3.5 95.6 1.0
CD2 D:LEU518 3.6 97.6 1.0
CA D:GLY164 3.8 0.2 1.0
CA D:SER165 3.8 97.2 1.0
C D:GLY164 3.9 0.1 1.0
CD1 D:LEU518 3.9 93.8 1.0
CG D:PRO168 4.1 93.1 1.0
CG D:LEU518 4.2 95.6 1.0
CB D:LEU518 4.4 95.0 1.0
N D:GLY166 4.7 95.5 1.0
CB D:PRO168 4.7 93.2 1.0
O D:ILE421 4.8 0.3 1.0
OG D:SER165 4.8 94.2 1.0
C D:SER165 4.8 96.4 1.0
CD D:PRO168 4.9 91.7 1.0

Chlorine binding site 8 out of 8 in 3org

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Chlorine binding site 8 out of 8 in the Crystal Structure of A Eukaryotic Clc Transporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of A Eukaryotic Clc Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl802

b:97.9
occ:1.00
 N D:TRP209 2.9 99.3 1.0
N D:GLU210 3.2 94.9 1.0
CD1 D:TRP209 3.2 98.5 1.0
N D:VAL431 3.3 99.1 1.0
CA D:GLY208 3.6 0.8 1.0
CG2 D:VAL431 3.6 0.3 1.0
CB D:VAL431 3.7 0.8 1.0
C D:GLY208 3.7 1.0 1.0
CG D:GLU210 3.8 93.0 1.0
CB D:GLU210 3.8 91.8 1.0
CA D:TRP209 3.9 98.7 1.0
CB D:PHE430 3.9 93.1 1.0
N D:PHE430 3.9 95.6 1.0
C D:TRP209 4.0 96.1 1.0
NE1 D:TRP209 4.0 98.8 1.0
CA D:GLU210 4.0 92.6 1.0
CA D:VAL431 4.1 0.9 1.0
CG D:TRP209 4.2 99.8 1.0
CA D:PHE430 4.2 95.2 1.0
C D:PHE430 4.2 97.6 1.0
CD D:PRO432 4.4 0.1 1.0
CB D:TRP209 4.5 0.4 1.0
N D:VAL429 4.9 96.7 1.0
N D:GLY208 5.0 0.5 1.0
O D:GLY208 5.0 0.0 1.0
C D:VAL429 5.0 97.0 1.0

Reference:

L.Feng, E.B.Campbell, Y.Hsiung, R.Mackinnon. Structure of A Eukaryotic Clc Transporter Defines An Intermediate State in the Transport Cycle. Science V. 330 635 2010.
ISSN: ISSN 0036-8075
PubMed: 20929736
DOI: 10.1126/SCIENCE.1195230
Page generated: Fri Jul 11 08:50:14 2025

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