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Chlorine in PDB 3oyz: Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex

Enzymatic activity of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex

All present enzymatic activity of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex:
2.3.3.9;

Protein crystallography data

The structure of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex, PDB code: 3oyz was solved by B.R.Howard, C.Bracken, A.Neighbor, G.Thomas, K.K.Lamlenn, H.L.Schubert, F.G.Whitby, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.95
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 154.788, 154.788, 142.144, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 23.9

Other elements in 3oyz:

The structure of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Potassium (K) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex (pdb code 3oyz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex, PDB code: 3oyz:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 1 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl701

b:45.3
occ:1.00
 NH2 A:ARG95 3.2 35.3 1.0
NH1 A:ARG95 3.4 33.6 1.0
O A:ARG89 3.6 33.3 1.0
CZ A:ARG95 3.7 34.8 1.0
CG A:PRO92 3.8 34.6 1.0
CD A:PRO92 3.8 30.3 1.0
C A:ASP90 3.8 35.1 1.0
O A:ASP90 3.9 35.1 1.0
CA A:ASP90 4.0 34.5 1.0
N A:SER91 4.3 34.2 1.0
N A:PRO92 4.4 30.9 1.0
C A:ARG89 4.5 32.1 1.0
O A:HOH438 4.6 33.3 1.0
N A:ASP90 4.7 30.7 1.0
CA A:SER91 4.8 33.9 1.0
C A:SER91 4.9 32.1 1.0

Chlorine binding site 2 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 2 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:37.1
occ:1.00
 NH2 A:ARG170 3.3 39.4 1.0
O A:HOH574 3.7 54.6 1.0
CZ A:ARG170 4.2 49.1 1.0
NH1 A:ARG170 4.2 46.8 1.0
O A:HOH519 4.5 39.2 1.0

Chlorine binding site 3 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 3 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:47.6
occ:1.00
 ND1 A:HIS101 3.0 42.7 1.0
N A:VAL86 3.2 34.7 1.0
ND2 A:ASN50 3.2 36.8 1.0
CG2 A:VAL86 3.7 36.6 1.0
CA A:MET85 3.7 36.6 1.0
CB A:HIS101 3.8 36.1 1.0
CG A:HIS101 3.8 40.9 1.0
CB A:ASN50 3.9 36.9 1.0
C A:MET85 3.9 37.6 1.0
CG1 A:VAL86 3.9 37.3 1.0
CG A:ASN50 4.0 41.0 1.0
CE1 A:HIS101 4.1 36.1 1.0
CB A:MET85 4.1 35.1 1.0
CB A:VAL86 4.2 36.8 1.0
CE A:MET85 4.2 38.4 1.0
SD A:MET85 4.2 43.6 1.0
CA A:VAL86 4.2 34.0 1.0
CA A:GLY98 4.4 33.0 1.0
O A:ASN50 4.5 37.9 1.0
O A:GLN97 4.7 38.2 1.0
CG A:MET85 4.8 43.4 1.0
O A:ARG84 4.9 37.2 1.0
C A:ASN50 4.9 38.3 1.0
N A:MET85 5.0 36.6 1.0

Chlorine binding site 4 out of 4 in 3oyz

Go back to Chlorine Binding Sites List in 3oyz
Chlorine binding site 4 out of 4 in the Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Haloferax Volcanii Malate Synthase Pyruvate/Acetyl-Coa Ternary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl705

b:34.5
occ:1.00
 K A:K602 3.1 37.1 1.0
O A:HOH518 3.2 55.2 1.0
O A:HOH462 3.2 30.1 1.0
N A:ALA227 3.3 27.9 1.0
CA A:VAL226 3.8 29.2 1.0
O A:GLY252 3.9 31.9 1.0
C A:VAL226 4.0 29.5 1.0
CB A:ALA227 4.0 26.1 1.0
O A:CYS225 4.1 31.3 1.0
CB A:ALA220 4.1 27.1 1.0
CA A:ALA227 4.2 27.5 1.0
CG1 A:VAL226 4.4 28.2 1.0
O A:ALA227 4.6 32.6 1.0
OG A:SER221 4.6 38.6 1.0
CB A:VAL226 4.6 30.0 1.0
N A:VAL226 4.8 29.7 1.0
C A:CYS225 4.9 30.5 1.0
C A:ALA227 5.0 30.5 1.0
O A:SER217 5.0 28.6 1.0

Reference:

C.D.Bracken, A.M.Neighbor, K.K.Lamlenn, G.C.Thomas, H.L.Schubert, F.G.Whitby, B.R.Howard. Crystal Structures of A Halophilic Archaeal Malate Synthase From Haloferax Volcanii and Comparisons with Isoforms A and G. Bmc Struct.Biol. V. 11 23 2011.
ISSN: ESSN 1472-6807
PubMed: 21569248
DOI: 10.1186/1472-6807-11-23
Page generated: Fri Jul 11 08:56:22 2025

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