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Chlorine in PDB 3p0z: Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol

Enzymatic activity of Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol

All present enzymatic activity of Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol:
4.6.1.12;

Protein crystallography data

The structure of Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol, PDB code: 3p0z was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.83 / 1.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.550, 67.630, 59.770, 90.00, 95.99, 90.00
R / Rfree (%) 15.2 / 19.1

Other elements in 3p0z:

The structure of Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol also contains other interesting chemical elements:

Potassium (K) 1 atom
Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol (pdb code 3p0z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol, PDB code: 3p0z:

Chlorine binding site 1 out of 1 in 3p0z

Go back to Chlorine Binding Sites List in 3p0z
Chlorine binding site 1 out of 1 in the Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei with Cytidine and FOL955, 4- (1H-Imidazol)-1-Yl)Phenol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl163

b:32.7
occ:1.00
 N A:LYS138 3.2 25.5 1.0
N A:ASN136 3.3 20.6 1.0
CG A:GLN103 3.5 26.2 1.0
CA A:GLY143 3.6 21.4 1.0
CB A:GLN103 3.7 23.3 1.0
N A:GLU137 3.7 22.8 1.0
CA A:LYS138 3.7 26.9 1.0
CB A:THR135 3.7 22.9 1.0
CA A:GLN103 3.8 22.2 1.0
C A:ASN136 3.8 21.8 1.0
CA A:ASN136 3.9 20.1 1.0
C A:GLU137 4.2 26.2 1.0
C A:THR135 4.2 21.1 1.0
CB A:ASN136 4.2 18.9 1.0
O A:GLY143 4.2 23.5 1.0
CA A:THR135 4.2 20.6 1.0
OG1 A:THR135 4.3 21.1 1.0
CA A:GLU137 4.3 25.7 1.0
C A:GLY143 4.4 22.2 1.0
O A:LEU142 4.4 20.7 1.0
N A:GLN103 4.5 21.0 1.0
N A:GLY143 4.5 20.2 1.0
O A:ASN136 4.5 21.6 1.0
C A:LYS138 4.7 26.0 1.0
CG A:LYS138 4.7 31.0 1.0
O A:HOH255 4.7 16.9 1.0
CG2 A:THR135 4.7 21.7 1.0
CB A:LYS138 4.8 28.6 1.0
C A:LEU142 4.8 20.2 1.0
N A:LEU139 4.9 23.6 1.0
CD A:GLN103 4.9 29.8 1.0

Reference:

D.W.Begley, R.C.Hartley, D.R.Davies, T.E.Edwards, J.T.Leonard, J.Abendroth, C.A.Burris, J.Bhandari, P.J.Myler, B.L.Staker, L.J.Stewart. Leveraging Structure Determination with Fragment Screening For Infectious Disease Drug Targets: Mecp Synthase From Burkholderia Pseudomallei. J Struct Funct Genomics V. 12 63 2011.
PubMed: 21359640
DOI: 10.1007/S10969-011-9102-6
Page generated: Fri Jul 11 08:57:56 2025

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