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Chlorine in PDB 3p1i: Ligand Binding Domain of Human Ephrin Type-B Receptor 3

Enzymatic activity of Ligand Binding Domain of Human Ephrin Type-B Receptor 3

All present enzymatic activity of Ligand Binding Domain of Human Ephrin Type-B Receptor 3:
2.7.10.1;

Protein crystallography data

The structure of Ligand Binding Domain of Human Ephrin Type-B Receptor 3, PDB code: 3p1i was solved by J.R.Walker, L.Yermekbayeva, A.Seitova, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.75 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.160, 102.160, 117.860, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 23.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ligand Binding Domain of Human Ephrin Type-B Receptor 3 (pdb code 3p1i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Ligand Binding Domain of Human Ephrin Type-B Receptor 3, PDB code: 3p1i:

Chlorine binding site 1 out of 1 in 3p1i

Go back to Chlorine Binding Sites List in 3p1i
Chlorine binding site 1 out of 1 in the Ligand Binding Domain of Human Ephrin Type-B Receptor 3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ligand Binding Domain of Human Ephrin Type-B Receptor 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl0

b:70.4
occ:1.00
N B:THR49 3.4 35.5 1.0
OG B:SER50 3.5 38.6 1.0
N B:SER50 3.7 37.4 1.0
OG1 B:THR49 3.8 40.3 1.0
CA B:VAL48 4.0 33.2 1.0
CG1 B:VAL48 4.1 32.9 1.0
C B:VAL48 4.2 33.8 1.0
CA B:THR49 4.3 37.3 1.0
CB B:SER50 4.3 38.7 1.0
C B:THR49 4.5 37.3 1.0
CB B:VAL48 4.5 32.1 1.0
CA B:SER50 4.6 36.9 1.0
CB B:THR49 4.7 38.4 1.0
CG2 B:VAL48 4.8 33.2 1.0
O B:TRP47 4.9 34.8 1.0

Reference:

J.R.Walker, L.Yermekbayeva, A.Seitova, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon. Ligand Binding Domain of Human EPHB3 To Be Published.
Page generated: Sun Jul 21 02:06:56 2024

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