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Chlorine in PDB 3p65: Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme

Enzymatic activity of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme

All present enzymatic activity of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme, PDB code: 3p65 was solved by H.Wei, Z.Wang, J.Zhang, S.House, Y.-G.Gao, L.Yang, H.Robinson, L.H.Tan, H.Xing, C.Hou, I.M.Robertson, J.-M.Zuo, Y.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.641, 78.641, 37.130, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 22.5

Other elements in 3p65:

The structure of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme also contains other interesting chemical elements:

Gold (Au) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme (pdb code 3p65). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme, PDB code: 3p65:

Chlorine binding site 1 out of 1 in 3p65

Go back to Chlorine Binding Sites List in 3p65
Chlorine binding site 1 out of 1 in the Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Time-Dependent and Protein-Directed in Situ Growth of Gold Nanoparticles in A Single Crystal of Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:25.2
occ:1.00
 AU A:AU304 2.0 64.0 0.3
N A:ILE88 3.3 14.7 1.0
O A:HOH2084 3.4 27.1 1.0
CG1 A:ILE88 3.7 13.8 1.0
CA A:ASP87 3.8 14.2 1.0
NE2 A:HIS15 3.9 20.1 1.0
C A:ASP87 4.1 13.8 1.0
O A:SER86 4.1 16.2 1.0
CB A:ALA11 4.2 15.4 1.0
OD1 A:ASP87 4.2 22.6 1.0
CZ A:PHE3 4.3 18.2 1.0
CB A:ILE88 4.4 13.3 1.0
CG2 A:ILE88 4.4 16.9 1.0
CA A:ILE88 4.4 13.1 1.0
CG A:ASP87 4.5 25.2 1.0
CB A:ASP87 4.6 18.4 1.0
CD2 A:HIS15 4.7 17.1 1.0
CD1 A:ILE88 4.7 16.3 1.0
N A:ASP87 4.7 13.6 1.0
CE1 A:HIS15 4.8 19.7 1.0
CE2 A:PHE3 4.8 14.6 1.0
C A:SER86 4.9 13.9 1.0
O A:HOH2109 4.9 43.3 1.0

Reference:

H.Wei, Z.Wang, J.Zhang, S.House, Y.G.Gao, L.Yang, H.Robinson, L.H.Tan, H.Xing, C.Hou, I.M.Robertson, J.M.Zuo, Y.Lu. Time-Dependent, Protein-Directed Growth of Gold Nanoparticles Within A Single Crystal of Lysozyme. Nat Nanotechnol V. 6 93 2011.
ISSN: ISSN 1748-3387
PubMed: 21278750
DOI: 10.1038/NNANO.2010.280
Page generated: Sun Jul 21 02:11:32 2024

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