Atomistry » Chlorine » PDB 3rmn-3ruu » 3rpl
Atomistry »
  Chlorine »
    PDB 3rmn-3ruu »
      3rpl »

Chlorine in PDB 3rpl: D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate

Enzymatic activity of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate

All present enzymatic activity of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate:
3.1.3.11; 3.1.3.37;

Protein crystallography data

The structure of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate, PDB code: 3rpl was solved by X.Hu, D.Hui, F.Lingling, W.Jian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.72 / 2.40
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 145.222, 145.222, 169.104, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 20.7

Other elements in 3rpl:

The structure of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate also contains other interesting chemical elements:

Magnesium (Mg) 12 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate (pdb code 3rpl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate, PDB code: 3rpl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 1 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl354

b:50.2
occ:1.00
 NH1 A:ARG60 3.9 24.7 1.0
NH2 A:ARG60 4.0 23.1 1.0
CZ A:ARG60 4.4 28.4 1.0

Chlorine binding site 2 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 2 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl354

b:37.0
occ:1.00
 CB C:CYS281 3.3 29.8 1.0
NZ C:LYS142 3.3 36.5 1.0
N C:PHE240 3.3 21.7 1.0
O C:PHE240 3.4 20.8 1.0
N C:CYS281 3.5 24.5 1.0
C C:PHE240 3.9 20.8 1.0
CB C:ASN280 3.9 29.7 1.0
ND1 C:HIS239 4.0 17.1 1.0
CA C:HIS239 4.0 17.3 1.0
CA C:CYS281 4.1 27.4 1.0
C C:HIS239 4.2 20.6 1.0
CG C:HIS239 4.2 20.4 1.0
CA C:PHE240 4.2 20.6 1.0
CE1 C:HIS239 4.2 19.5 1.0
OE2 C:GLU282 4.3 35.4 1.0
CA C:ASN280 4.4 26.8 1.0
O C:GLY238 4.4 21.4 1.0
OE1 C:GLU282 4.4 51.2 1.0
CG C:GLN241 4.5 22.5 1.0
C C:ASN280 4.5 26.2 1.0
CD2 C:HIS239 4.5 19.1 1.0
NE2 C:HIS239 4.5 17.2 1.0
SG C:CYS281 4.6 35.7 1.0
CE C:LYS142 4.6 36.2 1.0
CG C:LYS142 4.6 23.5 1.0
CB C:HIS239 4.7 19.1 1.0
CG C:ASN280 4.7 40.3 1.0
N C:GLN241 4.7 18.4 1.0
CD C:GLU282 4.8 52.4 1.0

Chlorine binding site 3 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 3 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl355

b:45.0
occ:1.00
 O2 C:GOL358 3.6 36.5 1.0
CG1 C:ILE220 3.9 26.9 1.0
CD1 C:ILE220 3.9 29.4 1.0
CG C:LYS133 4.3 27.2 1.0
CD C:LYS133 4.3 27.5 1.0
CE C:LYS133 4.4 33.3 1.0
CA C:GLY219 4.5 19.8 1.0
C C:GLY219 4.7 20.1 1.0
N C:ILE220 4.7 23.4 1.0
O3 C:GOL358 4.9 33.8 1.0
CB C:LYS133 4.9 25.4 1.0
CD2 C:LEU182 5.0 18.7 1.0

Chlorine binding site 4 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 4 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl356

b:65.3
occ:1.00
 O A:HOH451 3.3 30.6 1.0
O B:HOH494 3.4 36.1 1.0
O A:HOH426 3.6 24.0 1.0
O A:HOH560 3.7 28.7 1.0
O B:HOH406 3.7 29.2 1.0
O B:HOH467 3.8 26.2 1.0
OG B:SER210 3.8 25.1 1.0
O B:HOH490 4.3 26.8 1.0
CB B:SER210 4.4 18.2 1.0
NE2 C:GLN343 4.6 18.6 1.0
O A:HOH666 4.6 33.9 1.0
CG1 C:VAL341 4.7 20.2 1.0
O1P A:AMP349 4.7 16.1 1.0
CG2 C:VAL341 4.8 17.8 1.0
O B:HOH762 4.9 31.7 1.0
O B:HOH388 4.9 19.2 1.0

Chlorine binding site 5 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 5 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl357

b:58.9
occ:1.00
 OD2 C:ASP129 3.5 45.9 1.0
O C:ASP129 3.8 41.2 1.0
CG C:ASP129 4.1 55.4 1.0
CZ C:TYR131 4.1 33.5 1.0
C C:PHE130 4.2 31.1 1.0
O C:PHE130 4.2 35.3 1.0
CE2 C:TYR131 4.2 31.5 1.0
C C:ASP129 4.2 38.6 1.0
CB C:ALA222 4.2 20.8 1.0
CE1 C:TYR131 4.3 32.9 1.0
CD2 C:TYR131 4.4 36.7 1.0
N C:TYR131 4.4 28.8 1.0
CD1 C:TYR131 4.4 30.1 1.0
OD1 C:ASP129 4.5 63.6 1.0
CG C:TYR131 4.5 33.3 1.0
CA C:PHE130 4.6 31.6 1.0
OH C:TYR131 4.6 33.5 1.0
N C:PHE130 4.6 32.1 1.0
CA C:ALA222 4.8 24.4 1.0
CA C:TYR131 4.9 27.9 1.0
CA C:ASP129 5.0 38.2 1.0

Chlorine binding site 6 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 6 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl353

b:46.5
occ:1.00
 O D:HOH716 3.0 33.5 1.0
OG D:SER197 3.1 22.9 1.0
OD2 D:ASP198 3.6 17.1 1.0
CB D:SER197 3.6 18.2 1.0
CD2 D:LEU104 4.0 19.3 1.0
OE1 D:GLN109 4.0 27.1 1.0
CB D:ASN103 4.1 19.6 1.0
CB D:ASP198 4.2 18.9 1.0
N D:LEU104 4.2 18.3 1.0
C D:ASN103 4.2 19.4 1.0
CG D:ASP198 4.3 23.6 1.0
O D:SER197 4.3 20.2 1.0
O D:ASN103 4.3 17.0 1.0
CG D:LEU104 4.4 17.6 1.0
C D:SER197 4.4 19.5 1.0
CA D:LEU104 4.5 18.0 1.0
CA D:SER197 4.7 16.5 1.0
ND2 D:ASN103 4.7 33.2 1.0
CG D:ASN103 4.7 27.6 1.0
O D:HOH392 4.8 22.0 1.0
O D:HOH497 4.8 22.8 1.0
CA D:ASN103 4.8 18.2 1.0
N D:ASP198 4.8 18.0 1.0

Reference:

X.Hu, F.Lingling. New Insights Into the Structural and Interactional Basis For A Promising Route Towards Fructose-1,6-/Sedoheptulose-1,7-Bisphosphatases Controlling To Be Published.
Page generated: Fri Jul 11 09:56:55 2025

Last articles

Mg in 2UU7
Mg in 2UAG
Mg in 2UKD
Mg in 2SHK
Mg in 2TPS
Mg in 2TRT
Mg in 2TRA
Mg in 2RMK
Mg in 2RUS
Mg in 2TCT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy