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Chlorine in PDB 3rpl: D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate

Enzymatic activity of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate

All present enzymatic activity of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate:
3.1.3.11; 3.1.3.37;

Protein crystallography data

The structure of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate, PDB code: 3rpl was solved by X.Hu, D.Hui, F.Lingling, W.Jian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.72 / 2.40
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 145.222, 145.222, 169.104, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 20.7

Other elements in 3rpl:

The structure of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate also contains other interesting chemical elements:

Magnesium (Mg) 12 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate (pdb code 3rpl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate, PDB code: 3rpl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 1 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl354

b:50.2
occ:1.00
 NH1 A:ARG60 3.9 24.7 1.0
NH2 A:ARG60 4.0 23.1 1.0
CZ A:ARG60 4.4 28.4 1.0

Chlorine binding site 2 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 2 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl354

b:37.0
occ:1.00
 CB C:CYS281 3.3 29.8 1.0
NZ C:LYS142 3.3 36.5 1.0
N C:PHE240 3.3 21.7 1.0
O C:PHE240 3.4 20.8 1.0
N C:CYS281 3.5 24.5 1.0
C C:PHE240 3.9 20.8 1.0
CB C:ASN280 3.9 29.7 1.0
ND1 C:HIS239 4.0 17.1 1.0
CA C:HIS239 4.0 17.3 1.0
CA C:CYS281 4.1 27.4 1.0
C C:HIS239 4.2 20.6 1.0
CG C:HIS239 4.2 20.4 1.0
CA C:PHE240 4.2 20.6 1.0
CE1 C:HIS239 4.2 19.5 1.0
OE2 C:GLU282 4.3 35.4 1.0
CA C:ASN280 4.4 26.8 1.0
O C:GLY238 4.4 21.4 1.0
OE1 C:GLU282 4.4 51.2 1.0
CG C:GLN241 4.5 22.5 1.0
C C:ASN280 4.5 26.2 1.0
CD2 C:HIS239 4.5 19.1 1.0
NE2 C:HIS239 4.5 17.2 1.0
SG C:CYS281 4.6 35.7 1.0
CE C:LYS142 4.6 36.2 1.0
CG C:LYS142 4.6 23.5 1.0
CB C:HIS239 4.7 19.1 1.0
CG C:ASN280 4.7 40.3 1.0
N C:GLN241 4.7 18.4 1.0
CD C:GLU282 4.8 52.4 1.0

Chlorine binding site 3 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 3 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl355

b:45.0
occ:1.00
 O2 C:GOL358 3.6 36.5 1.0
CG1 C:ILE220 3.9 26.9 1.0
CD1 C:ILE220 3.9 29.4 1.0
CG C:LYS133 4.3 27.2 1.0
CD C:LYS133 4.3 27.5 1.0
CE C:LYS133 4.4 33.3 1.0
CA C:GLY219 4.5 19.8 1.0
C C:GLY219 4.7 20.1 1.0
N C:ILE220 4.7 23.4 1.0
O3 C:GOL358 4.9 33.8 1.0
CB C:LYS133 4.9 25.4 1.0
CD2 C:LEU182 5.0 18.7 1.0

Chlorine binding site 4 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 4 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl356

b:65.3
occ:1.00
 O A:HOH451 3.3 30.6 1.0
O B:HOH494 3.4 36.1 1.0
O A:HOH426 3.6 24.0 1.0
O A:HOH560 3.7 28.7 1.0
O B:HOH406 3.7 29.2 1.0
O B:HOH467 3.8 26.2 1.0
OG B:SER210 3.8 25.1 1.0
O B:HOH490 4.3 26.8 1.0
CB B:SER210 4.4 18.2 1.0
NE2 C:GLN343 4.6 18.6 1.0
O A:HOH666 4.6 33.9 1.0
CG1 C:VAL341 4.7 20.2 1.0
O1P A:AMP349 4.7 16.1 1.0
CG2 C:VAL341 4.8 17.8 1.0
O B:HOH762 4.9 31.7 1.0
O B:HOH388 4.9 19.2 1.0

Chlorine binding site 5 out of 6 in 3rpl

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Chlorine binding site 5 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl357

b:58.9
occ:1.00
 OD2 C:ASP129 3.5 45.9 1.0
O C:ASP129 3.8 41.2 1.0
CG C:ASP129 4.1 55.4 1.0
CZ C:TYR131 4.1 33.5 1.0
C C:PHE130 4.2 31.1 1.0
O C:PHE130 4.2 35.3 1.0
CE2 C:TYR131 4.2 31.5 1.0
C C:ASP129 4.2 38.6 1.0
CB C:ALA222 4.2 20.8 1.0
CE1 C:TYR131 4.3 32.9 1.0
CD2 C:TYR131 4.4 36.7 1.0
N C:TYR131 4.4 28.8 1.0
CD1 C:TYR131 4.4 30.1 1.0
OD1 C:ASP129 4.5 63.6 1.0
CG C:TYR131 4.5 33.3 1.0
CA C:PHE130 4.6 31.6 1.0
OH C:TYR131 4.6 33.5 1.0
N C:PHE130 4.6 32.1 1.0
CA C:ALA222 4.8 24.4 1.0
CA C:TYR131 4.9 27.9 1.0
CA C:ASP129 5.0 38.2 1.0

Chlorine binding site 6 out of 6 in 3rpl

Go back to Chlorine Binding Sites List in 3rpl
Chlorine binding site 6 out of 6 in the D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of D-Fructose 1,6-Bisphosphatase Class 2/Sedoheptulose 1,7-Bisphosphatase of Synechocystis Sp. Pcc 6803 in Complex with Fructose-1,6- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl353

b:46.5
occ:1.00
 O D:HOH716 3.0 33.5 1.0
OG D:SER197 3.1 22.9 1.0
OD2 D:ASP198 3.6 17.1 1.0
CB D:SER197 3.6 18.2 1.0
CD2 D:LEU104 4.0 19.3 1.0
OE1 D:GLN109 4.0 27.1 1.0
CB D:ASN103 4.1 19.6 1.0
CB D:ASP198 4.2 18.9 1.0
N D:LEU104 4.2 18.3 1.0
C D:ASN103 4.2 19.4 1.0
CG D:ASP198 4.3 23.6 1.0
O D:SER197 4.3 20.2 1.0
O D:ASN103 4.3 17.0 1.0
CG D:LEU104 4.4 17.6 1.0
C D:SER197 4.4 19.5 1.0
CA D:LEU104 4.5 18.0 1.0
CA D:SER197 4.7 16.5 1.0
ND2 D:ASN103 4.7 33.2 1.0
CG D:ASN103 4.7 27.6 1.0
O D:HOH392 4.8 22.0 1.0
O D:HOH497 4.8 22.8 1.0
CA D:ASN103 4.8 18.2 1.0
N D:ASP198 4.8 18.0 1.0

Reference:

X.Hu, F.Lingling. New Insights Into the Structural and Interactional Basis For A Promising Route Towards Fructose-1,6-/Sedoheptulose-1,7-Bisphosphatases Controlling To Be Published.
Page generated: Sun Jul 21 03:52:16 2024

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