Atomistry » Chlorine » PDB 3s8o-3seo » 3sbp
Atomistry »
  Chlorine »
    PDB 3s8o-3seo »
      3sbp »

Chlorine in PDB 3sbp: Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form

Enzymatic activity of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form

All present enzymatic activity of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form:
1.7.99.6;

Protein crystallography data

The structure of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form, PDB code: 3sbp was solved by A.Pomowski, W.G.Zumft, P.M.H.Kroneck, O.Einsle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.02 / 2.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 96.890, 106.700, 131.139, 111.34, 107.33, 90.74
R / Rfree (%) 17.7 / 23.6

Other elements in 3sbp:

The structure of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form also contains other interesting chemical elements:

Potassium (K) 8 atoms
Calcium (Ca) 8 atoms
Copper (Cu) 48 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form (pdb code 3sbp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form, PDB code: 3sbp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 1 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:46.9
occ:1.00
 ND2 A:ASN241 2.9 36.2 1.0
N A:CYS328 3.0 31.4 1.0
NH1 A:ARG181 3.2 31.5 1.0
ND1 A:HIS382 3.2 33.6 1.0
ND2 A:ASN329 3.3 27.2 1.0
CE1 A:HIS382 3.4 34.5 1.0
O A:CYS328 3.5 30.3 1.0
CG A:ASN241 3.5 34.1 1.0
CB A:ASN241 3.5 33.4 1.0
CA A:GLY327 3.6 32.5 1.0
NH2 A:ARG181 3.6 29.9 1.0
C A:GLY327 3.8 32.2 1.0
CZ A:ARG181 3.9 32.1 1.0
C A:CYS328 3.9 30.2 1.0
CG A:ASN329 4.0 27.9 1.0
CA A:CYS328 4.0 31.3 1.0
OD1 A:ASN329 4.1 28.2 1.0
CE1 A:HIS433 4.2 36.7 1.0
OD1 A:ASN241 4.5 34.8 1.0
CG A:HIS382 4.6 32.4 1.0
NE2 A:HIS382 4.7 34.5 1.0
CB A:CYS328 4.7 31.6 1.0
N A:ASN329 4.8 29.4 1.0
NE2 A:HIS433 4.9 37.0 1.0
CA A:ASN241 4.9 33.4 1.0
N A:GLY327 4.9 33.8 1.0
ND1 A:HIS433 5.0 35.4 1.0

Chlorine binding site 2 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 2 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:50.3
occ:1.00
 NH1 B:ARG181 3.1 35.9 1.0
CE1 B:HIS382 3.3 24.4 0.5
N B:CYS328 3.3 25.0 1.0
ND1 B:HIS382 3.4 25.6 0.5
ND1 B:HIS382 3.4 23.9 0.5
CB B:ASN241 3.5 26.2 1.0
ND2 B:ASN241 3.6 28.1 1.0
CG B:ASN241 3.6 27.4 1.0
CE1 B:HIS382 3.6 25.8 0.5
NH2 B:ARG181 3.6 35.9 1.0
ND2 B:ASN329 3.7 17.7 1.0
O B:CYS328 3.7 24.4 1.0
CA B:GLY327 3.7 24.8 1.0
CZ B:ARG181 3.8 35.9 1.0
C B:GLY327 4.0 24.8 1.0
OD1 B:ASN329 4.1 23.7 1.0
C B:CYS328 4.1 24.9 1.0
CG B:ASN329 4.2 22.6 1.0
CA B:CYS328 4.2 25.4 1.0
CE1 B:HIS433 4.2 28.3 1.0
O B:HOH2213 4.3 24.9 1.0
OD1 B:ASN241 4.3 28.0 1.0
NE2 B:HIS382 4.5 25.4 0.5
CG B:HIS382 4.7 25.1 0.5
CB B:CYS328 4.7 25.7 1.0
CG B:HIS382 4.7 24.5 0.5
CA B:ASN241 4.8 26.3 1.0
NE2 B:HIS382 4.9 25.6 0.5
N B:THR242 4.9 25.9 1.0
N B:GLY327 4.9 24.6 1.0
O B:THR242 5.0 26.0 1.0
ND1 B:HIS433 5.0 28.1 1.0
O B:HIS326 5.0 25.1 1.0

Chlorine binding site 3 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 3 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl704

b:26.9
occ:1.00
 ND1 C:HIS382 3.2 22.2 1.0
N C:CYS328 3.3 14.7 1.0
NH1 C:ARG181 3.3 21.4 1.0
CB C:ASN241 3.4 15.9 1.0
CG C:ASN241 3.5 17.0 1.0
CE1 C:HIS382 3.5 24.3 1.0
NH2 C:ARG181 3.5 18.9 1.0
ND2 C:ASN329 3.6 11.4 1.0
CA C:GLY327 3.7 14.1 1.0
O C:CYS328 3.8 15.2 1.0
OD1 C:ASN241 3.8 21.3 1.0
CZ C:ARG181 3.9 22.4 1.0
ND2 C:ASN241 3.9 19.5 1.0
OD1 C:ASN329 4.0 15.3 1.0
C C:GLY327 4.0 14.8 1.0
CG C:ASN329 4.1 14.9 1.0
C C:CYS328 4.1 15.1 1.0
CA C:CYS328 4.2 15.2 1.0
CE1 C:HIS433 4.2 22.7 1.0
O C:HOH1049 4.5 33.5 1.0
CG C:HIS382 4.6 20.2 1.0
O C:HOH1981 4.6 12.8 1.0
ND1 C:HIS433 4.7 22.1 1.0
NE2 C:HIS382 4.8 23.5 1.0
CB C:CYS328 4.8 14.8 1.0
CA C:ASN241 4.8 14.9 1.0
N C:GLY327 4.9 13.8 1.0
O C:HIS326 4.9 13.3 1.0
N C:ASN329 5.0 14.8 1.0
N C:THR242 5.0 14.3 1.0

Chlorine binding site 4 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 4 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl704

b:25.5
occ:1.00
 ND1 D:HIS382 3.2 25.6 1.0
O D:HOH2739 3.3 37.0 1.0
NH1 D:ARG181 3.3 21.1 1.0
CE1 D:HIS382 3.3 28.2 1.0
N D:CYS328 3.3 20.9 1.0
ND2 D:ASN329 3.4 19.2 1.0
NH2 D:ARG181 3.6 24.1 1.0
CG D:ASN241 3.6 23.1 1.0
CB D:ASN241 3.7 22.6 1.0
CA D:GLY327 3.7 20.7 1.0
ND2 D:ASN241 3.8 26.4 1.0
O D:CYS328 3.8 21.6 1.0
CZ D:ARG181 3.9 23.3 1.0
CG D:ASN329 4.0 21.2 1.0
C D:GLY327 4.0 20.9 1.0
OD1 D:ASN329 4.0 21.6 1.0
CE1 D:HIS433 4.1 27.3 1.0
OD1 D:ASN241 4.2 22.4 1.0
C D:CYS328 4.2 21.2 1.0
CA D:CYS328 4.3 21.2 1.0
CG D:HIS382 4.6 23.6 1.0
NE2 D:HIS382 4.6 27.4 1.0
NE2 D:HIS433 4.7 28.0 1.0
O D:HOH1653 4.7 22.9 1.0
ND1 D:HIS433 4.9 26.9 1.0
N D:GLY327 4.9 21.1 1.0
N D:ASN329 5.0 21.3 1.0

Chlorine binding site 5 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 5 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl704

b:23.2
occ:1.00
 NH1 E:ARG181 3.1 27.1 1.0
ND1 E:HIS382 3.2 20.1 1.0
N E:CYS328 3.2 13.7 1.0
ND2 E:ASN329 3.3 14.8 1.0
CE1 E:HIS382 3.5 22.8 1.0
NH2 E:ARG181 3.5 27.8 1.0
CB E:ASN241 3.7 14.5 1.0
O E:CYS328 3.7 13.3 1.0
CG E:ASN241 3.7 17.1 1.0
CA E:GLY327 3.7 13.1 1.0
ND2 E:ASN241 3.8 20.4 1.0
CZ E:ARG181 3.8 28.6 1.0
CG E:ASN329 3.9 15.8 1.0
OD1 E:ASN329 3.9 17.1 1.0
C E:GLY327 4.0 13.5 1.0
C E:CYS328 4.0 13.9 1.0
CE1 E:HIS433 4.1 23.8 1.0
CA E:CYS328 4.2 14.4 1.0
OD1 E:ASN241 4.4 20.6 1.0
O E:HOH1097 4.4 37.3 1.0
CG E:HIS382 4.5 17.5 1.0
O E:HOH1299 4.7 14.8 1.0
NE2 E:HIS382 4.7 22.1 1.0
N E:ASN329 4.8 13.2 1.0
ND1 E:HIS433 4.8 23.0 1.0
CB E:CYS328 4.8 14.5 1.0
NE2 E:HIS433 4.9 24.1 1.0
N E:GLY327 5.0 12.9 1.0

Chlorine binding site 6 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 6 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl704

b:24.1
occ:1.00
 ND2 F:ASN241 2.9 22.0 1.0
NH1 F:ARG181 3.1 22.0 1.0
ND1 F:HIS382 3.3 19.0 1.0
N F:CYS328 3.3 14.1 1.0
ND2 F:ASN329 3.3 12.8 1.0
CG F:ASN241 3.4 18.5 1.0
CB F:ASN241 3.6 15.2 1.0
CE1 F:HIS382 3.6 21.4 1.0
NH2 F:ARG181 3.6 23.4 1.0
CA F:GLY327 3.7 13.0 1.0
O F:CYS328 3.8 14.9 1.0
CZ F:ARG181 3.8 24.7 1.0
CG F:ASN329 4.0 13.8 1.0
C F:GLY327 4.1 13.7 1.0
OD1 F:ASN329 4.1 15.3 1.0
O F:HOH2403 4.1 29.1 1.0
C F:CYS328 4.2 14.9 1.0
CE1 F:HIS433 4.2 23.7 1.0
OD1 F:ASN241 4.2 21.6 1.0
CA F:CYS328 4.3 14.9 1.0
O F:HOH1627 4.4 24.2 1.0
CG F:HIS382 4.6 17.5 1.0
ND1 F:HIS433 4.7 24.9 1.0
CB F:CYS328 4.8 15.1 1.0
NE2 F:HIS382 4.9 18.9 1.0
CA F:ASN241 5.0 14.4 1.0

Chlorine binding site 7 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 7 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl704

b:29.3
occ:1.00
 NH1 G:ARG181 3.3 22.8 1.0
ND1 G:HIS382 3.3 26.3 1.0
ND2 G:ASN329 3.4 12.4 1.0
N G:CYS328 3.4 18.9 1.0
NH2 G:ARG181 3.4 22.7 1.0
ND2 G:ASN241 3.5 27.9 1.0
CE1 G:HIS382 3.6 29.0 1.0
CB G:ASN241 3.6 22.7 1.0
CG G:ASN241 3.7 25.1 1.0
O G:CYS328 3.7 18.9 1.0
CZ G:ARG181 3.8 23.3 1.0
CA G:GLY327 3.9 19.6 1.0
CG G:ASN329 4.1 16.4 1.0
C G:CYS328 4.1 18.4 1.0
OD1 G:ASN329 4.1 14.3 1.0
C G:GLY327 4.2 19.5 1.0
O G:HOH1581 4.2 21.9 1.0
CA G:CYS328 4.3 19.2 1.0
O G:HOH818 4.3 42.6 1.0
CE1 G:HIS433 4.3 26.8 1.0
OD1 G:ASN241 4.4 26.4 1.0
CG G:HIS382 4.6 23.2 1.0
CB G:CYS328 4.9 19.5 1.0
NE2 G:HIS382 4.9 27.2 1.0
N G:ASN329 5.0 17.5 1.0
CA G:ASN241 5.0 22.3 1.0

Chlorine binding site 8 out of 8 in 3sbp

Go back to Chlorine Binding Sites List in 3sbp
Chlorine binding site 8 out of 8 in the Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Pseudomonas Stutzeri Nitrous Oxide Reductase, P1 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl704

b:29.6
occ:1.00
 CE1 H:HIS382 3.2 26.7 1.0
ND1 H:HIS382 3.2 24.0 1.0
N H:CYS328 3.3 15.5 1.0
NH1 H:ARG181 3.4 29.0 1.0
CB H:ASN241 3.5 16.6 1.0
ND2 H:ASN241 3.6 23.1 1.0
CG H:ASN241 3.6 18.9 1.0
ND2 H:ASN329 3.6 16.2 1.0
O H:CYS328 3.7 14.7 1.0
NH2 H:ARG181 3.7 34.1 1.0
CA H:GLY327 3.7 15.1 1.0
CZ H:ARG181 4.0 29.5 1.0
C H:GLY327 4.0 15.4 1.0
CE1 H:HIS433 4.0 23.7 1.0
C H:CYS328 4.1 15.6 1.0
OD1 H:ASN329 4.2 16.4 1.0
CG H:ASN329 4.2 17.1 1.0
CA H:CYS328 4.3 15.8 1.0
OD1 H:ASN241 4.3 23.0 1.0
O H:HOH1537 4.4 15.7 1.0
NE2 H:HIS382 4.5 24.8 1.0
CG H:HIS382 4.6 19.8 1.0
ND1 H:HIS433 4.7 24.4 1.0
CA H:ASN241 4.8 16.1 1.0
CB H:CYS328 4.8 15.6 1.0
N H:GLY327 4.9 14.8 1.0
N H:THR242 5.0 16.1 1.0
N H:ASN329 5.0 15.6 1.0

Reference:

A.Pomowski, W.G.Zumft, P.M.Kroneck, O.Einsle. N2O Binding at A [4CU:2S] Copper-Sulphur Cluster in Nitrous Oxide Reductase. Nature V. 477 234 2011.
ISSN: ISSN 0028-0836
PubMed: 21841804
DOI: 10.1038/NATURE10332
Page generated: Fri Jul 11 10:12:02 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy