Atomistry » Chlorine » PDB 3s8o-3seo » 3scl
Atomistry »
  Chlorine »
    PDB 3s8o-3seo »
      3scl »

Chlorine in PDB 3scl: Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3scl was solved by K.Wu, G.Peng, M.Wilken, R.Geraghty, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.55 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.670, 119.523, 113.532, 90.00, 92.50, 90.00
R / Rfree (%) 23.9 / 29.2

Other elements in 3scl:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2 (pdb code 3scl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2, PDB code: 3scl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3scl

Go back to Chlorine Binding Sites List in 3scl
Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:0.3
occ:1.00
NE A:ARG169 3.3 74.0 1.0
NE1 A:TRP477 3.4 58.7 1.0
NH1 A:ARG169 3.7 74.0 1.0
CB A:ASP499 3.7 64.4 1.0
CZ2 A:TRP478 3.8 66.8 1.0
CZ A:ARG169 4.0 73.7 1.0
CH2 A:TRP478 4.0 67.5 1.0
CE2 A:TRP477 4.2 57.2 1.0
CZ2 A:TRP477 4.2 56.2 1.0
CE A:LYS481 4.3 45.1 1.0
CD A:ARG169 4.4 74.6 1.0
CD1 A:TRP477 4.5 60.4 1.0
O A:ASP499 4.5 61.5 1.0
C A:ASP499 4.5 61.8 1.0
CG A:ASP499 4.6 64.5 1.0
OD1 A:ASP499 4.6 64.6 1.0
CA A:ASP499 4.7 64.0 1.0
CZ2 A:TRP165 4.7 58.0 1.0
OG A:SER502 4.8 55.0 1.0
CE2 A:TRP478 4.8 66.3 1.0
CD1 A:TRP271 5.0 66.5 1.0
N A:PRO500 5.0 59.7 1.0

Chlorine binding site 2 out of 2 in 3scl

Go back to Chlorine Binding Sites List in 3scl
Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From Sars Coronavirus Epidemic Strain Complexed with Human-Civet Chimeric Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl902

b:0.4
occ:1.00
NE1 B:TRP477 3.1 73.9 1.0
CZ2 B:TRP477 3.3 73.1 1.0
CE2 B:TRP477 3.5 73.8 1.0
NH1 B:ARG169 3.6 74.9 1.0
NE B:ARG169 3.7 74.7 1.0
CB B:ASP499 3.9 71.4 1.0
CH2 B:TRP478 4.0 84.4 1.0
CZ2 B:TRP478 4.1 84.5 1.0
CZ B:ARG169 4.2 74.2 1.0
CD1 B:TRP477 4.4 75.8 1.0
CH2 B:TRP477 4.5 73.1 1.0
O B:ASP499 4.6 70.7 1.0
CE B:LYS481 4.6 70.7 1.0
C B:ASP499 4.6 70.8 1.0
CG B:ASP499 4.7 72.2 1.0
CZ3 B:TRP478 4.8 84.3 1.0
CD B:ARG169 4.9 74.2 1.0
CD2 B:TRP477 4.9 75.2 1.0
OD1 B:ASP499 4.9 71.7 1.0
CA B:ASP499 4.9 71.3 1.0
CE2 B:TRP478 5.0 84.7 1.0
CZ2 B:TRP165 5.0 59.8 1.0

Reference:

K.Wu, G.Peng, M.Wilken, R.Geraghty, F.Li. Sars Coronavirus: Mechanism of Host Receptor Adaptation and Rational Prediction of Future Evolution To Be Published.
Page generated: Fri Jul 11 10:14:11 2025

Last articles

Cl in 3UZ5
Cl in 3UXD
Cl in 3UY9
Cl in 3UZC
Cl in 3UXH
Cl in 3UXE
Cl in 3UX0
Cl in 3UWT
Cl in 3UUW
Cl in 3UWD
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy