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Chlorine in PDB 3ser: Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization

Protein crystallography data

The structure of Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization, PDB code: 3ser was solved by M.Zhao, A.B.Soriaga, A.Laganowsky, M.R.Sawaya, D.Cascio, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.15 / 2.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.700, 116.370, 65.040, 90.00, 99.47, 90.00
R / Rfree (%) 18.1 / 22.2

Other elements in 3ser:

The structure of Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization (pdb code 3ser). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization, PDB code: 3ser:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3ser

Go back to Chlorine Binding Sites List in 3ser
Chlorine binding site 1 out of 3 in the Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl373

b:60.1
occ:1.00
O A:HOH391 3.5 30.6 1.0
ND2 A:ASN151 3.6 16.6 1.0
CB A:ASP210 3.9 24.4 1.0
OD1 A:ASN151 3.9 18.3 1.0
N A:TYR211 3.9 19.9 1.0
CG A:ASN151 4.1 16.6 1.0
CB A:GLN153 4.1 25.2 1.0
CB A:TYR211 4.2 19.5 1.0
CG A:GLN153 4.4 27.7 1.0
CG A:ASP210 4.6 29.6 1.0
CG2 C:THR54 4.6 59.2 1.0
CA A:ASP210 4.7 21.6 1.0
CA A:TYR211 4.7 21.1 1.0
OD2 A:ASP210 4.8 34.7 1.0
C A:ASP210 4.8 19.8 1.0

Chlorine binding site 2 out of 3 in 3ser

Go back to Chlorine Binding Sites List in 3ser
Chlorine binding site 2 out of 3 in the Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl375

b:50.9
occ:1.00
ZN C:ZN374 2.5 25.7 1.0
OD1 C:ASP165 3.7 23.2 1.0
CD C:LYS252 3.8 33.7 1.0
OD2 C:ASP165 4.3 36.4 1.0
CG C:ASP165 4.4 28.9 1.0
CB C:LYS252 4.6 28.8 1.0
CE C:LYS252 4.6 36.5 1.0
CG C:LYS252 4.7 31.7 1.0

Chlorine binding site 3 out of 3 in 3ser

Go back to Chlorine Binding Sites List in 3ser
Chlorine binding site 3 out of 3 in the Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Zn-Mediated Polymer of Maltose-Binding Protein K26H/K30H By Synthetic Symmetrization within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl376

b:64.5
occ:1.00
O C:ASP208 3.1 32.9 1.0
CD C:GLN153 3.8 27.7 1.0
C C:ASP208 3.9 28.8 1.0
CG C:GLN153 4.0 24.8 1.0
CB C:ASP210 4.1 19.9 1.0
OE1 C:GLN153 4.1 32.8 1.0
NE2 C:GLN153 4.1 24.0 1.0
OD2 C:ASP210 4.1 25.1 1.0
CA C:ASP208 4.2 32.8 1.0
CB C:ASP208 4.4 41.4 1.0
CG C:ASP210 4.4 23.0 1.0
N C:ASP210 4.7 20.0 1.0
N A:LYS2 4.7 44.3 1.0
OD1 C:ASP208 4.9 51.7 1.0
C C:THR209 4.9 23.9 1.0
CA C:ASP210 4.9 18.2 1.0
N C:THR209 4.9 24.5 1.0

Reference:

A.Laganowsky, M.Zhao, A.B.Soriaga, M.R.Sawaya, D.Cascio, T.O.Yeates. An Approach to Crystallizing Proteins By Metal-Mediated Synthetic Symmetrization. Protein Sci. V. 20 1876 2011.
ISSN: ISSN 0961-8368
PubMed: 21898649
DOI: 10.1002/PRO.727
Page generated: Sun Jul 21 04:26:56 2024

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