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Chlorine in PDB 3uxd: Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt)

Protein crystallography data

The structure of Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt), PDB code: 3uxd was solved by O.Khersonsky, G.Kiss, D.Roethlisberger, O.Dym, S.Albeck, K.N.Houk, D.Baker, D.S.Tawfik, Israel Structural Proteomics Center (Ispc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.08 / 1.80
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 62.127, 62.127, 120.128, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 23.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt) (pdb code 3uxd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt), PDB code: 3uxd:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 3uxd

Go back to Chlorine Binding Sites List in 3uxd
Chlorine binding site 1 out of 4 in the Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl291

b:56.0
occ:0.80
CLA A:0CU291 0.0 56.0 0.8
CAH A:0CU291 1.7 47.7 0.8
CAC A:0CU291 2.6 47.9 0.8
CAD A:0CU291 2.6 44.8 0.8
CD2 A:LEU108 3.3 20.0 1.0
CB A:TRP110 3.5 18.2 1.0
CA A:TRP110 3.6 18.2 1.0
CA A:GLY131 3.6 17.7 1.0
CG A:TRP110 3.6 23.1 1.0
N A:GLY131 3.8 17.4 1.0
CAJ A:0CU291 3.9 44.3 0.8
CAI A:0CU291 3.9 46.4 0.8
CD1 A:TRP110 4.0 23.9 1.0
O A:MET109 4.2 18.4 1.0
O A:HOH332 4.2 27.6 1.0
CD2 A:TRP110 4.3 26.2 1.0
CAK A:0CU291 4.4 44.4 0.8
CG A:LEU108 4.4 20.0 1.0
CG2 A:VAL159 4.4 16.8 1.0
N A:TRP110 4.4 17.1 1.0
C A:GLY131 4.5 17.8 1.0
CD1 A:LEU108 4.6 22.7 1.0
C A:MET109 4.6 17.7 1.0
CD1 A:ILE178 4.6 16.7 1.0
C A:TRP110 4.7 17.3 1.0
NE1 A:TRP110 4.8 26.8 1.0
N A:ASP111 4.8 17.1 1.0
CE3 A:TRP110 4.9 28.1 1.0
CE2 A:TRP110 4.9 26.2 1.0
CG1 A:VAL81 4.9 18.6 1.0
O A:GLY131 4.9 18.8 1.0
C A:VAL130 5.0 17.4 1.0

Chlorine binding site 2 out of 4 in 3uxd

Go back to Chlorine Binding Sites List in 3uxd
Chlorine binding site 2 out of 4 in the Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl291

b:47.5
occ:0.80
CLB A:0CU291 0.0 47.5 0.8
CAI A:0CU291 1.7 46.4 0.8
CAC A:0CU291 2.7 47.9 0.8
CAK A:0CU291 2.7 44.4 0.8
NAG A:0CU291 3.2 43.2 0.8
CD1 A:ILE133 3.6 16.7 1.0
NE1 A:TRP110 3.6 26.8 1.0
CZ2 A:TRP110 3.6 26.4 1.0
CE2 A:TRP110 3.7 26.2 1.0
CG1 A:ILE133 3.9 13.7 1.0
CAH A:0CU291 4.0 47.7 0.8
CAJ A:0CU291 4.0 44.3 0.8
CG1 A:VAL159 4.0 13.2 1.0
CD1 A:LEU184 4.1 26.4 1.0
CD2 A:LEU184 4.2 30.4 1.0
NAE A:0CU291 4.4 43.9 0.8
CD1 A:TRP110 4.5 23.9 1.0
CG A:LEU184 4.5 25.0 1.0
CAD A:0CU291 4.5 44.8 0.8
CH2 A:TRP110 4.6 29.3 1.0
CB A:VAL159 4.7 14.3 1.0
CD2 A:TRP110 4.7 26.2 1.0
CG2 A:VAL159 4.7 16.8 1.0
CG2 A:ILE133 4.8 15.8 1.0
NAF A:0CU291 4.8 43.6 0.8
CB A:ILE133 5.0 15.3 1.0

Chlorine binding site 3 out of 4 in 3uxd

Go back to Chlorine Binding Sites List in 3uxd
Chlorine binding site 3 out of 4 in the Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl291

b:53.1
occ:0.80
CLA B:0CU291 0.0 53.1 0.8
CAH B:0CU291 1.7 45.6 0.8
CAC B:0CU291 2.6 46.2 0.8
CAD B:0CU291 2.7 44.0 0.8
CA B:GLY131 3.3 18.1 1.0
CB B:TRP110 3.5 18.9 1.0
CG B:TRP110 3.6 23.6 1.0
CA B:TRP110 3.6 18.6 1.0
N B:GLY131 3.7 17.7 1.0
CD1 B:TRP110 3.8 24.2 1.0
CD2 B:LEU108 3.8 19.5 1.0
CAI B:0CU291 3.9 46.1 0.8
CAJ B:0CU291 3.9 45.0 0.8
C B:GLY131 4.1 17.3 1.0
CG2 B:VAL159 4.2 17.0 1.0
O B:MET109 4.3 18.0 1.0
CD2 B:TRP110 4.3 26.6 1.0
O B:GLY131 4.4 19.0 1.0
CAK B:0CU291 4.4 45.6 0.8
C B:TRP110 4.5 17.7 1.0
NE1 B:TRP110 4.5 28.7 1.0
N B:ASP111 4.6 17.3 1.0
N B:TRP110 4.6 17.2 1.0
O B:ASP111 4.7 18.2 1.0
C B:MET109 4.8 17.4 1.0
O B:HOH282 4.8 19.1 1.0
CE2 B:TRP110 4.8 27.5 1.0
CG B:LEU108 4.9 18.4 1.0
C B:VAL130 4.9 17.9 1.0
CD1 B:ILE178 5.0 17.7 1.0
N B:LEU132 5.0 16.2 1.0

Chlorine binding site 4 out of 4 in 3uxd

Go back to Chlorine Binding Sites List in 3uxd
Chlorine binding site 4 out of 4 in the Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Designed Protein KE59 R1 7/10H with Dichlorobenzotriazole (Dbt) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl291

b:46.2
occ:0.80
CLB B:0CU291 0.0 46.2 0.8
CAI B:0CU291 1.7 46.1 0.8
CAC B:0CU291 2.7 46.2 0.8
CAK B:0CU291 2.8 45.6 0.8
NAG B:0CU291 3.3 43.9 0.8
CD1 B:ILE133 3.7 15.5 1.0
CZ2 B:TRP110 3.8 28.2 1.0
CG1 B:VAL159 3.8 14.4 1.0
CD1 B:LEU184 3.9 26.9 1.0
NE1 B:TRP110 3.9 28.7 1.0
CE2 B:TRP110 3.9 27.5 1.0
CG1 B:ILE133 4.0 14.3 1.0
CD2 B:LEU184 4.0 31.5 1.0
CAH B:0CU291 4.0 45.6 0.8
CAJ B:0CU291 4.1 45.0 0.8
CG B:LEU184 4.3 25.7 1.0
NAE B:0CU291 4.5 45.4 0.8
CAD B:0CU291 4.6 44.0 0.8
CH2 B:TRP110 4.6 29.6 1.0
CB B:VAL159 4.7 14.8 1.0
CG2 B:ILE133 4.7 16.3 1.0
CD1 B:TRP110 4.8 24.2 1.0
CG2 B:VAL159 4.8 17.0 1.0
NAF B:0CU291 4.9 45.2 0.8
CD2 B:TRP110 4.9 26.6 1.0
CB B:ILE133 4.9 16.0 1.0

Reference:

O.Khersonsky, G.Kiss, D.Rothlisberger, O.Dym, S.Albeck, K.N.Houk, D.Baker, D.S.Tawfik. Bridging the Gaps in Design Methodologies By Evolutionary Optimization of the Stability and Proficiency of Designed Kemp Eliminase KE59. Proc.Natl.Acad.Sci.Usa V. 109 10358 2012.
ISSN: ISSN 0027-8424
PubMed: 22685214
DOI: 10.1073/PNAS.1121063109
Page generated: Fri Jul 11 11:31:45 2025

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