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Chlorine in PDB 3v6n: Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination

Protein crystallography data

The structure of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination, PDB code: 3v6n was solved by U.Sharma, C.G.Suresh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.94 / 2.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.246, 73.360, 87.174, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.6

Other elements in 3v6n:

The structure of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination also contains other interesting chemical elements:

Iodine (I) 2 atoms
Calcium (Ca) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination (pdb code 3v6n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination, PDB code: 3v6n:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 3v6n

Go back to Chlorine Binding Sites List in 3v6n
Chlorine binding site 1 out of 3 in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl230

b:15.5
occ:1.00
 N A:ILE58 3.3 14.2 1.0
N B:ILE58 3.4 15.4 1.0
CA B:THR57 3.6 16.2 1.0
CA A:THR57 3.6 15.1 1.0
CB B:THR57 3.7 15.7 1.0
CB A:THR57 3.7 14.6 1.0
CG B:PRO101 3.8 20.1 1.0
CG2 A:ILE58 3.9 14.4 1.0
CG2 B:ILE58 3.9 15.1 1.0
CG A:PRO101 3.9 18.3 1.0
C A:THR57 3.9 14.8 1.0
C B:THR57 4.0 15.7 1.0
CG1 B:ILE58 4.1 14.9 1.0
CG1 A:ILE58 4.1 14.2 1.0
CG2 A:THR57 4.3 14.5 1.0
CB B:ILE58 4.3 15.1 1.0
CB A:ILE58 4.3 14.3 1.0
CG2 B:THR57 4.4 15.8 1.0
CA A:ILE58 4.4 14.4 1.0
CA B:ILE58 4.4 15.1 1.0
CD1 A:ILE58 4.5 14.8 1.0
CD1 B:ILE58 4.7 15.5 1.0
CD B:PRO101 4.7 19.4 1.0
O A:LYS56 4.8 17.9 1.0
O B:LYS56 4.8 17.9 1.0
CD A:PRO101 4.8 17.7 1.0
CB B:PRO101 4.8 19.4 1.0
OG1 B:THR57 4.8 15.4 1.0
N B:THR57 4.9 17.0 1.0
N A:THR57 4.9 16.4 1.0
OG1 A:THR57 4.9 13.7 1.0
CB A:PRO101 5.0 17.8 1.0

Chlorine binding site 2 out of 3 in 3v6n

Go back to Chlorine Binding Sites List in 3v6n
Chlorine binding site 2 out of 3 in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl231

b:10.5
occ:1.00
 NA A:NA232 2.7 12.0 1.0
O A:ALA176 3.5 12.5 1.0
N A:SER67 3.5 12.3 1.0
N A:ALA176 3.5 14.3 1.0
O A:SER67 3.5 12.7 1.0
N A:ALA9 3.5 12.4 1.0
N A:ALA123 3.5 12.4 1.0
O A:ALA9 3.7 11.8 1.0
CA A:ALA8 3.7 13.0 1.0
O A:ALA123 3.8 11.9 1.0
CA A:ALA122 3.8 12.7 1.0
CA A:SER175 4.0 16.7 1.0
OG A:SER175 4.0 20.1 1.0
CA A:CYS66 4.0 12.1 1.0
CB A:ALA8 4.1 12.6 1.0
C A:ALA8 4.1 12.8 1.0
C A:ALA122 4.1 12.8 1.0
C A:SER175 4.2 15.8 1.0
C A:CYS66 4.2 12.2 1.0
SG A:CYS66 4.3 13.1 1.0
CB A:ALA122 4.3 12.8 1.0
C A:ALA176 4.4 12.9 1.0
CA A:ALA176 4.4 13.5 1.0
C A:SER67 4.4 12.7 1.0
CA A:SER67 4.5 12.7 1.0
CB A:SER175 4.5 17.9 1.0
CA A:ALA9 4.5 12.3 1.0
C A:ALA9 4.5 12.1 1.0
CA A:ALA123 4.5 12.2 1.0
C A:ALA123 4.6 12.3 1.0
O A:ASN7 4.6 14.2 1.0
CB A:CYS66 4.7 12.3 1.0
O A:ASP121 4.7 12.3 1.0
OG A:SER67 4.8 15.0 1.0
N A:ALA8 4.9 13.6 1.0
N A:ALA122 4.9 12.8 1.0
CB A:ALA123 4.9 11.9 1.0
CB A:ALA176 4.9 13.5 1.0
CB A:ALA9 5.0 12.2 1.0

Chlorine binding site 3 out of 3 in 3v6n

Go back to Chlorine Binding Sites List in 3v6n
Chlorine binding site 3 out of 3 in the Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Plant Albumin From Cicer Arietinum Showing Hemagglutination within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl230

b:14.5
occ:1.00
 NA B:NA231 2.6 14.8 1.0
N B:SER67 3.4 15.6 1.0
N B:ALA123 3.4 16.2 1.0
N B:ALA9 3.5 17.5 1.0
N B:ALA176 3.5 18.8 1.0
O B:ALA176 3.5 16.5 1.0
O B:SER67 3.5 14.6 1.0
CA B:ALA8 3.6 17.2 1.0
CA B:ALA122 3.6 16.8 1.0
O B:ALA9 3.7 15.7 1.0
O B:ALA123 3.8 15.8 1.0
CA B:SER175 4.0 21.8 1.0
CA B:CYS66 4.0 15.2 1.0
CB B:ALA8 4.0 17.0 1.0
CB B:ALA122 4.0 17.2 1.0
C B:ALA122 4.0 16.4 1.0
C B:ALA8 4.0 17.4 1.0
C B:CYS66 4.2 15.3 1.0
OG B:SER175 4.2 27.9 1.0
C B:SER175 4.2 20.3 1.0
SG B:CYS66 4.3 17.1 1.0
CB B:SER175 4.4 22.7 1.0
C B:SER67 4.4 15.6 1.0
CA B:SER67 4.4 16.0 1.0
C B:ALA176 4.4 17.1 1.0
CA B:ALA123 4.5 16.0 1.0
CA B:ALA176 4.5 17.7 1.0
CA B:ALA9 4.5 16.8 1.0
C B:ALA9 4.6 16.8 1.0
C B:ALA123 4.6 16.5 1.0
O B:ASN7 4.6 16.9 1.0
CB B:CYS66 4.7 15.8 1.0
O B:ASP121 4.7 16.2 1.0
N B:ALA8 4.8 17.4 1.0
OG B:SER67 4.8 19.2 1.0
N B:ALA122 4.8 16.6 1.0
CB B:ALA123 5.0 15.6 1.0
CB B:ALA176 5.0 17.5 1.0

Reference:

U.Sharma, U.V.Katre, C.G.Suresh. Crystal Structure of A Plant Albumin From Cicer Arietinum (Chickpea) Possessing Hemopexin Fold and Hemagglutination Activity Planta 2015.
ISSN: ISSN 0032-0935
PubMed: 25559942
DOI: 10.1007/S00425-014-2236-6
Page generated: Fri Jul 11 11:35:51 2025

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