Chlorine in PDB 3vbi: Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A

Enzymatic activity of Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A

All present enzymatic activity of Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A:
2.3.1.18;

Protein crystallography data

The structure of Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A, PDB code: 3vbi was solved by R.L.Kubiak, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	38.66 / 1.80
*Space group*	P 4₁
*Cell size a, b, c (Å), α, β, γ (°)*	71.115, 71.115, 138.179, 90.00, 90.00, 90.00
*R / R_free (%)*	19.8 / 24.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A (pdb code 3vbi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A, PDB code: 3vbi:

Chlorine binding site 1 out of 1 in 3vbi

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Chlorine Binding Sites List in 3vbi

Chlorine binding site 1 out of 1 in the Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Antd, An N-Acyltransferase From Bacillus Cereus in Complex with Dtdp-4-Amino-4,6-Dideoxyglucose and Coenzyme A within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
E:Cl190 b:20.7 occ:1.00	NH1	E:ARG86	3.1	17.9	1.0
	NH1	C:ARG86	3.1	20.2	1.0
	NH1	A:ARG86	3.1	16.9	1.0
	CG	E:ARG86	3.5	19.5	1.0
	CG	A:ARG86	3.6	17.8	1.0
	CD	E:ARG86	3.7	19.9	1.0
	CD	C:ARG86	3.7	21.7	1.0
	CD	A:ARG86	3.7	22.2	1.0
	CG	C:ARG86	3.9	22.4	1.0
	CD1	A:TYR65	3.9	15.5	1.0
	CD1	C:TYR65	4.0	16.8	1.0
	CD1	E:TYR65	4.0	17.1	1.0
	CB	C:TYR65	4.1	12.8	1.0
	CB	A:TYR65	4.1	16.0	1.0
	CZ	E:ARG86	4.1	23.0	1.0
	CG	A:TYR65	4.1	15.0	1.0
	CZ	C:ARG86	4.1	15.5	1.0
	CB	E:TYR65	4.1	17.2	1.0
	CG	C:TYR65	4.2	14.7	1.0
	CZ	A:ARG86	4.2	22.4	1.0
	CG	E:TYR65	4.2	16.1	1.0
	NE	E:ARG86	4.3	18.9	1.0
	NE	C:ARG86	4.4	14.2	1.0
	NE	A:ARG86	4.4	19.7	1.0
	CE1	A:TYR65	4.7	17.9	1.0
	CE1	E:TYR65	4.7	20.3	1.0
	CE1	C:TYR65	4.7	12.7	1.0
	CB	E:ARG86	4.9	13.2	1.0
	CB	A:ARG86	5.0	17.0	1.0
	CD2	A:TYR65	5.0	16.3	1.0

Reference:

R.L.Kubiak, H.M.Holden. Structural Studies of Antd: An N-Acyltransferase Involved in the Biosynthesis of D-Anthrose. Biochemistry V. 51 867 2012.
ISSN: ISSN 0006-2960
PubMed: 22220494
DOI: 10.1021/BI201650C

Page generated: Fri Jul 11 11:37:26 2025

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