Chlorine in PDB 3vip: Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product

Enzymatic activity of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product

All present enzymatic activity of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product, PDB code: 3vip was solved by W.Y.Jeng, C.I.Liu, A.H.J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	22.90 / 1.28
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	92.785, 68.500, 75.075, 90.00, 95.38, 90.00
*R / R_free (%)*	12 / 14.4

Other elements in 3vip:

The structure of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product also contains other interesting chemical elements:

Sodium

(Na)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product (pdb code 3vip). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product, PDB code: 3vip:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3vip

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Chlorine Binding Sites List in 3vip

Chlorine binding site 1 out of 2 in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl511 b:18.4 occ:0.50	O	A:HOH1062	2.8	51.4	1.0
	O	A:HOH606	3.1	13.1	1.0
	O	A:HOH779	3.7	28.8	1.0
	CB	A:ARG495	4.1	13.2	1.0
	CD	A:ARG495	4.3	14.2	1.0
	N	A:ARG495	4.6	11.8	1.0
	OE2	A:GLU494	4.6	13.6	1.0
	CG	A:ARG495	4.6	13.2	1.0
	CA	A:ARG495	4.8	13.2	1.0

Chlorine binding site 2 out of 2 in 3vip

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Chlorine Binding Sites List in 3vip

Chlorine binding site 2 out of 2 in the Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Beta-Glucosidase From Termite Neotermes Koshunensis in Complex with A New Glucopyranosidic Product within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl512 b:28.6 occ:0.50	N	A:ASN262	3.1	17.6	1.0
	CB	A:ASN262	3.7	22.2	1.0
	CB	A:THR261	3.8	14.3	1.0
	CA	A:THR261	3.9	13.8	1.0
	C	A:THR261	4.0	14.9	1.0
	CA	A:ASN262	4.0	19.4	1.0
	O	A:HOH1029	4.6	31.9	1.0
	CG2	A:THR261	4.7	15.7	1.0
	OG1	A:THR261	4.8	15.2	1.0

Reference:

W.Y.Jeng, N.C.Wang, C.T.Lin, W.J.Chang, C.I.Liu, A.H.J.Wang. High-Resolution Structures of Neotermes Koshunensis Beta-Glucosidase Mutants Provide Insights Into the Catalytic Mechanism and the Synthesis of Glucoconjugates Acta Crystallogr.,Sect.D V. 68 829 2012.
ISSN: ISSN 0907-4449
PubMed: 22751668
DOI: 10.1107/S0907444912013224

Page generated: Sun Jul 21 06:59:33 2024

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