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Chlorine in PDB 3vl2: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa, PDB code: 3vl2 was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.31 / 2.06
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.298, 58.251, 76.044, 90.00, 119.09, 90.00
R / Rfree (%) 13.6 / 19.1

Other elements in 3vl2:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa (pdb code 3vl2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa, PDB code: 3vl2:

Chlorine binding site 1 out of 1 in 3vl2

Go back to Chlorine Binding Sites List in 3vl2
Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 160 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:12.1
occ:1.00
 O A:HOH590 3.0 28.7 1.0
N A:ILE142 3.1 10.5 1.0
N A:LEU246 3.2 9.3 1.0
CA A:GLY141 3.6 10.0 1.0
O A:HOH593 3.6 30.2 1.0
CB A:ASN245 3.7 9.8 1.0
N A:ASN245 3.7 10.0 1.0
CG2 A:ILE142 3.7 10.5 1.0
CB A:LEU246 3.8 9.6 1.0
C A:GLY141 3.9 11.1 1.0
CE A:MET163 3.9 14.2 1.0
CG A:MET163 4.0 11.7 1.0
CA A:ASN245 4.0 9.2 1.0
CE2 A:TYR165 4.0 7.4 1.0
CA A:LEU246 4.1 10.7 1.0
CB A:ILE142 4.1 11.2 1.0
C A:ASN245 4.1 10.3 1.0
CA A:ILE142 4.2 11.4 1.0
OG A:SER244 4.3 18.9 1.0
OH A:TYR165 4.3 8.7 1.0
CB A:SER244 4.3 13.9 1.0
SD A:MET163 4.4 12.4 1.0
C A:SER244 4.5 11.5 1.0
CZ A:TYR165 4.6 8.7 1.0
N A:GLY141 4.7 9.0 1.0
O A:GLY140 4.7 9.8 1.0
N A:TYR143 4.9 13.2 1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862
Page generated: Fri Jul 11 11:44:58 2025

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