Chlorine in PDB 3vl4: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa, PDB code: 3vl4 was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.63 / 1.88
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	103.610, 57.633, 75.504, 90.00, 118.98, 90.00
*R / R_free (%)*	15.6 / 21.3

Other elements in 3vl4:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa (pdb code 3vl4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa, PDB code: 3vl4:

Chlorine binding site 1 out of 1 in 3vl4

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Chlorine Binding Sites List in 3vl4

Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 410 Mpa within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl403 b:10.6 occ:1.00	O	A:HOH695	3.0	34.8	1.0
	N	A:LEU246	3.2	9.1	1.0
	N	A:ILE142	3.3	9.1	1.0
	CA	A:GLY141	3.6	8.8	1.0
	N	A:ASN245	3.6	9.0	1.0
	CB	A:ASN245	3.7	9.1	1.0
	O	A:HOH577	3.7	26.4	1.0
	CB	A:LEU246	3.8	11.5	1.0
	CE	A:MET163	3.8	13.6	1.0
	CG2	A:ILE142	3.8	9.8	1.0
	C	A:GLY141	4.0	9.7	1.0
	CA	A:ASN245	4.0	8.9	1.0
	CE2	A:TYR165	4.0	9.0	1.0
	CG	A:MET163	4.0	8.7	1.0
	C	A:ASN245	4.1	9.2	1.0
	CB	A:SER244	4.1	8.4	1.0
	CA	A:LEU246	4.1	9.9	1.0
	OG	A:SER244	4.1	14.3	1.0
	OH	A:TYR165	4.1	9.5	1.0
	CB	A:ILE142	4.1	11.2	1.0
	CA	A:ILE142	4.3	8.9	1.0
	SD	A:MET163	4.4	14.0	1.0
	C	A:SER244	4.4	8.9	1.0
	CZ	A:TYR165	4.5	7.7	1.0
	N	A:GLY141	4.7	7.2	1.0
	O	A:GLY140	4.8	9.9	1.0
	CA	A:SER244	4.9	9.4	1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862

Page generated: Fri Jul 11 11:45:11 2025

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