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Chlorine in PDB 3vl7: 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa

Enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa

All present enzymatic activity of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa:
1.1.1.85;

Protein crystallography data

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa, PDB code: 3vl7 was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.57 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.135, 57.561, 75.067, 90.00, 118.67, 90.00
R / Rfree (%) 16.6 / 24.4

Other elements in 3vl7:

The structure of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa (pdb code 3vl7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa, PDB code: 3vl7:

Chlorine binding site 1 out of 1 in 3vl7

Go back to Chlorine Binding Sites List in 3vl7
Chlorine binding site 1 out of 1 in the 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 at 650 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:14.0
occ:1.00
 O A:HOH582 2.7 20.5 1.0
N A:ILE142 3.1 8.2 1.0
N A:LEU246 3.4 6.2 1.0
CA A:GLY141 3.5 7.7 1.0
O A:HOH576 3.7 23.0 1.0
N A:ASN245 3.7 6.5 1.0
CB A:ASN245 3.7 7.3 1.0
CG2 A:ILE142 3.7 9.1 1.0
CB A:LEU246 3.8 5.6 1.0
C A:GLY141 3.8 8.9 1.0
CE A:MET163 3.9 8.0 1.0
OG A:SER244 3.9 7.0 1.0
CG A:MET163 3.9 11.0 1.0
CE2 A:TYR165 4.0 9.8 1.0
CB A:ILE142 4.0 9.8 1.0
CA A:ASN245 4.1 6.4 1.0
CA A:ILE142 4.1 9.5 1.0
OH A:TYR165 4.1 5.9 1.0
CB A:SER244 4.1 6.4 1.0
CA A:LEU246 4.2 6.3 1.0
C A:ASN245 4.2 6.7 1.0
SD A:MET163 4.4 18.1 1.0
CZ A:TYR165 4.5 8.2 1.0
C A:SER244 4.6 7.1 1.0
N A:GLY141 4.7 7.0 1.0
O A:GLY140 4.7 5.0 1.0
N A:TYR143 4.8 12.3 1.0
CD2 A:TYR165 5.0 8.0 1.0
CA A:SER244 5.0 6.7 1.0
C A:ILE142 5.0 11.0 1.0

Reference:

T.Nagae, T.Kawamura, L.M.G.Chavas, K.Niwa, M.Hasegawa, C.Kato, N.Watanabe. High-Pressure-Induced Water Penetration Into 3-Isopropylmalate Dehydrogenase Acta Crystallogr.,Sect.D V. 68 300 2012.
ISSN: ISSN 0907-4449
PubMed: 22349232
DOI: 10.1107/S0907444912001862
Page generated: Fri Jul 11 11:45:17 2025

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