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Chlorine in PDB 3vml: Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O

Enzymatic activity of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O

All present enzymatic activity of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O:
1.1.1.85;

Protein crystallography data

The structure of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O, PDB code: 3vml was solved by T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.25 / 1.56
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 89.008, 107.523, 83.109, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.9

Other elements in 3vml:

The structure of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O (pdb code 3vml). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O, PDB code: 3vml:

Chlorine binding site 1 out of 1 in 3vml

Go back to Chlorine Binding Sites List in 3vml
Chlorine binding site 1 out of 1 in the Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) and Shewanella Benthica DB21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:10.4
occ:1.00
 O A:HOH964 3.1 22.9 1.0
N A:ILE142 3.3 9.8 1.0
N A:LEU246 3.3 8.8 1.0
O A:HOH591 3.5 22.1 1.0
CA A:GLY141 3.6 9.6 1.0
N A:ASN245 3.7 8.1 1.0
CB A:ASN245 3.8 8.4 1.0
CB A:LEU246 3.8 11.5 1.0
CG2 A:ILE142 3.8 12.5 1.0
CE A:MET163 3.8 13.4 1.0
C A:GLY141 3.9 11.6 1.0
CE1 A:TYR165 4.0 12.0 1.0
OG A:SER244 4.1 17.3 1.0
CA A:ASN245 4.1 9.6 1.0
C A:ASN245 4.1 7.9 1.0
CB A:SER244 4.1 13.4 1.0
CG A:MET163 4.1 9.3 1.0
OH A:TYR165 4.2 10.5 1.0
CB A:ILE142 4.2 10.2 1.0
CA A:LEU246 4.2 10.8 1.0
CA A:ILE142 4.3 10.9 1.0
SD A:MET163 4.4 12.2 1.0
CZ A:TYR165 4.6 11.8 1.0
C A:SER244 4.6 9.7 1.0
O A:GLY140 4.7 11.8 1.0
N A:GLY141 4.7 9.9 1.0
N A:TYR143 5.0 13.1 1.0
CA A:SER244 5.0 9.4 1.0

Reference:

Y.Hamajima, T.Nagae, N.Watanabe, C.Kato. Structure Analysis of Chimeric 3-Isopropylmalate Dehydrogenase Between the Obligate Piezophile Shewanella Benthica DB21MT-2 and the Nonpiezophile Shewanella Oneidensis Mr-1 To Be Published.
Page generated: Fri Jul 11 11:46:18 2025

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