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Chlorine in PDB 3vy5: N33Q Mutant of Fmn-Binding Protein From Desulfovibrio Vulgaris (Miyazaki F)

Protein crystallography data

The structure of N33Q Mutant of Fmn-Binding Protein From Desulfovibrio Vulgaris (Miyazaki F), PDB code: 3vy5 was solved by R.Takagi, T.Nakanishi, M.Kitamura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.767, 83.993, 40.445, 90.00, 93.74, 90.00
R / Rfree (%) 16.6 / 18.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the N33Q Mutant of Fmn-Binding Protein From Desulfovibrio Vulgaris (Miyazaki F) (pdb code 3vy5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the N33Q Mutant of Fmn-Binding Protein From Desulfovibrio Vulgaris (Miyazaki F), PDB code: 3vy5:

Chlorine binding site 1 out of 1 in 3vy5

Go back to Chlorine Binding Sites List in 3vy5
Chlorine binding site 1 out of 1 in the N33Q Mutant of Fmn-Binding Protein From Desulfovibrio Vulgaris (Miyazaki F)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of N33Q Mutant of Fmn-Binding Protein From Desulfovibrio Vulgaris (Miyazaki F) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:14.7
occ:1.00
O B:HOH351 3.2 18.9 1.0
N B:ARG71 3.2 10.9 1.0
NH1 B:ARG71 3.2 27.9 1.0
O A:HOH1109 3.3 16.2 1.0
CG B:ARG71 3.6 15.5 1.0
CA B:SER70 3.8 10.1 1.0
CD B:ARG71 3.8 19.4 1.0
CA A:GLY14 3.8 10.4 1.0
CB B:ARG71 3.8 12.4 1.0
C B:SER70 4.0 10.2 1.0
CZ3 A:TRP32 4.0 11.9 1.0
CA B:ARG71 4.1 11.9 1.0
CZ B:ARG71 4.3 26.2 1.0
N A:GLY14 4.3 11.3 1.0
O A:GLU13 4.4 13.5 1.0
C A:GLY14 4.5 10.2 1.0
NE B:ARG71 4.5 23.0 1.0
OG B:SER70 4.5 11.5 1.0
O B:GLY69 4.5 10.2 1.0
C A:GLU13 4.5 12.5 1.0
N A:VAL15 4.5 10.2 1.0
N B:SER70 4.7 9.6 1.0
CB B:SER70 4.7 10.4 1.0
CG2 A:VAL15 4.7 11.0 1.0
O B:GLU13 4.8 12.9 1.0
CG A:GLU13 4.8 13.3 1.0
CH2 A:TRP32 4.9 12.5 1.0
CE3 A:TRP32 4.9 11.0 1.0
C B:GLY69 4.9 9.5 1.0

Reference:

R.Takagi, T.Nakanishi, M.Kitamura. Crystal Structure of N33Q Mutant of Fmn-Binding Protein From Desulfovibrio Vulgaris (Miyazaki F) To Be Published.
Page generated: Fri Jul 11 11:50:07 2025

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