Chlorine in PDB 3vy6: Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose

The structure of Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose, PDB code: 3vy6 was solved by M.Kanagawa, Y.Yamaguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.55 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.200, 73.100, 30.500, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 22.7

The binding sites of Chlorine atom in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose (pdb code 3vy6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose, PDB code: 3vy6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl703 b:20.5 occ:1.00 OG A:SER127 3.3 23.2 1.0 C A:PHE128 3.6 18.1 1.0 N A:PHE128 3.7 19.2 1.0 CA A:PHE128 3.7 18.4 1.0 C A:SER127 3.8 20.4 1.0 CB A:SER127 3.8 21.5 1.0 O A:PHE128 3.8 17.7 1.0 N A:ASN129 3.8 17.7 1.0 CB A:ASN129 3.8 17.9 1.0 O A:SER127 4.0 20.3 1.0 CA A:SER127 4.4 21.3 1.0 CA A:ASN129 4.5 17.5 1.0 O A:HOH818 4.6 6.9 1.0 O A:HOH856 4.6 33.8 1.0 O A:HOH855 4.9 29.6 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Pancreatic Secretory Protein ZG16P with Laminaribiose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl704 b:65.2 occ:1.00 O A:HOH860 3.2 19.7 1.0 O A:TYR117 4.0 17.9 1.0 CD2 A:LEU118 4.8 17.3 1.0

M.Kanagawa, Y.Liu, S.Hanashima, A.Ikeda, W.Chai, Y.Nakano, K.Kojima-Aikawa, T.Feizi, Y.Yamaguchi. Structural Basis For Multiple Sugar Recognition of Jacalin-Related Human ZG16P Lectin J.Biol.Chem. V. 289 16954 2014.
ISSN: ISSN 0021-9258
PubMed: 24790092
DOI: 10.1074/JBC.M113.539114