Chlorine in PDB 3vyt: Crystal Structure of the Hypc-Hypd-Hype Complex (Form I Inward)

The structure of Crystal Structure of the Hypc-Hypd-Hype Complex (Form I Inward), PDB code: 3vyt was solved by S.Watanabe, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.79 / 2.25
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	78.333, 99.412, 103.923, 90.00, 97.79, 90.00
R / Rfree (%)	20.7 / 25.3

The structure of Crystal Structure of the Hypc-Hypd-Hype Complex (Form I Inward) also contains other interesting chemical elements:

Magnesium	(Mg)	5 atoms
Iron	(Fe)	4 atoms

The binding sites of Chlorine atom in the Crystal Structure of the Hypc-Hypd-Hype Complex (Form I Inward) (pdb code 3vyt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Hypc-Hypd-Hype Complex (Form I Inward), PDB code: 3vyt:

Chlorine binding site 1 out of 1 in the Crystal Structure of the Hypc-Hypd-Hype Complex (Form I Inward)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Hypc-Hypd-Hype Complex (Form I Inward) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl604 b:58.9 occ:1.00 MG C:MG601 3.0 34.5 1.0 MG C:MG606 3.2 60.4 1.0 OG1 C:THR223 3.4 38.7 1.0 OD1 C:ASP59 3.7 51.3 1.0 NE C:ARG224 3.7 58.0 1.0 O C:HOH701 3.8 36.7 1.0 NH2 C:ARG224 3.8 42.8 1.0 O C:HOH720 3.8 39.6 1.0 OD2 C:ASP59 3.9 44.8 1.0 CB C:THR223 4.0 34.1 1.0 CG C:ASP59 4.2 54.1 1.0 O C:HOH783 4.2 58.3 1.0 CZ C:ARG224 4.3 58.7 1.0 N C:ARG224 4.5 41.1 1.0 CG2 C:THR223 4.6 31.6 1.0 CB C:ARG224 4.7 53.6 1.0 CG C:ARG224 4.7 45.0 1.0 CD C:ARG224 4.8 51.4 1.0

S.Watanabe, R.Matsumi, H.Atomi, T.Imanaka, K.Miki. Crystal Structures of the Hypcd Complex and the Hypcde Ternary Complex: Transient Intermediate Complexes During [Nife] Hydrogenase Maturation Structure V. 20 2124 2012.
ISSN: ISSN 0969-2126
PubMed: 23123111
DOI: 10.1016/J.STR.2012.09.018