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Chlorine in PDB 3vzd: Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Enzymatic activity of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
All present enzymatic activity of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp:
2.7.1.91;
2.7.1.91;
Protein crystallography data
The structure of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp, PDB code: 3vzd
was solved by
X.Min,
N.P.Walker,
Z.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 50.00 / 2.30 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 102.202, 106.573, 226.020, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20.5 / 26.9 |
Other elements in 3vzd:
The structure of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp also contains other interesting chemical elements:
| Magnesium | (Mg) | 3 atoms |
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
(pdb code 3vzd). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp, PDB code: 3vzd:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
In total 10 binding sites of Chlorine where determined in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp, PDB code: 3vzd:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
Chlorine binding site 1 out of 10 in 3vzd
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Chlorine Binding Sites List in 3vzd
Chlorine binding site 1 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 2 out of 10 in 3vzd
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Chlorine Binding Sites List in 3vzd
Chlorine binding site 2 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 3 out of 10 in 3vzd
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Chlorine Binding Sites List in 3vzd
Chlorine binding site 3 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 4 out of 10 in 3vzd
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Chlorine Binding Sites List in 3vzd
Chlorine binding site 4 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 5 out of 10 in 3vzd
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Chlorine Binding Sites List in 3vzd
Chlorine binding site 5 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 6 out of 10 in 3vzd
Go back to
Chlorine Binding Sites List in 3vzd
Chlorine binding site 6 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 7 out of 10 in 3vzd
Go back to
Chlorine Binding Sites List in 3vzd
Chlorine binding site 7 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 8 out of 10 in 3vzd
Go back to
Chlorine Binding Sites List in 3vzd
Chlorine binding site 8 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 9 out of 10 in 3vzd
Go back to
Chlorine Binding Sites List in 3vzd
Chlorine binding site 9 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Chlorine binding site 10 out of 10 in 3vzd
Go back to
Chlorine Binding Sites List in 3vzd
Chlorine binding site 10 out
of 10 in the Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Sphingosine Kinase 1 with Inhibitor and Adp within 5.0Å range:
|
Reference:
Z.Wang,
X.Min,
S.H.Xiao,
S.Johnstone,
W.Romanow,
D.Meininger,
H.Xu,
J.Liu,
J.Dai,
S.An,
S.Thibault,
N.Walker.
Molecular Basis of Sphingosine Kinase 1 Substrate Recognition and Catalysis. Structure V. 21 798 2013.
ISSN: ISSN 0969-2126
PubMed: 23602659
DOI: 10.1016/J.STR.2013.02.025
Page generated: Fri Jul 11 11:51:07 2025
ISSN: ISSN 0969-2126
PubMed: 23602659
DOI: 10.1016/J.STR.2013.02.025
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