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Chlorine in PDB 3wmp: Crystal Structure of Sll-2

Protein crystallography data

The structure of Crystal Structure of Sll-2, PDB code: 3wmp was solved by A.Kita, M.Jimbo, R.Sakai, Y.Morimoto, R.Takeuchi, H.Tanaka, T.Takahashi, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 94.98 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.030, 189.950, 57.050, 90.00, 110.55, 90.00
R / Rfree (%) 25.1 / 27.1

Other elements in 3wmp:

The structure of Crystal Structure of Sll-2 also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Sll-2 (pdb code 3wmp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Crystal Structure of Sll-2, PDB code: 3wmp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 3wmp

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Chlorine binding site 1 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl104

b:78.1
occ:1.00
NH2 A:ARG58 3.0 39.3 1.0
OG1 A:THR80 3.1 46.1 1.0
N A:ASN56 3.3 41.6 1.0
CB A:ASN55 3.6 44.5 1.0
OD1 A:ASN55 3.6 48.1 1.0
NH1 A:ARG58 3.7 42.1 1.0
CZ A:ARG58 3.8 38.6 1.0
CA A:ASN55 3.9 44.4 1.0
CG A:ASN56 4.0 41.0 1.0
CG A:ASN55 4.0 48.4 1.0
CB A:ASN56 4.1 40.4 1.0
C A:ASN55 4.1 43.7 1.0
OD1 A:ASN56 4.2 42.0 1.0
CA A:ASN56 4.3 40.5 1.0
ND2 A:ASN56 4.4 41.6 1.0
CB A:THR80 4.5 47.4 1.0
CD2 A:TYR79 4.7 54.8 1.0

Chlorine binding site 2 out of 12 in 3wmp

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Chlorine binding site 2 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl105

b:69.5
occ:1.00
NH2 A:ARG16 3.0 67.3 1.0
N2 C:NAG102 3.1 48.3 1.0
NE A:ARG16 3.2 65.1 1.0
CZ A:ARG16 3.5 67.7 1.0
C3 C:NAG102 3.7 55.0 1.0
C2 C:NAG102 3.9 51.3 1.0
CE A:MET48 4.0 36.2 1.0
C8 C:NAG102 4.0 44.8 1.0
O3 C:NAG102 4.0 52.0 1.0
C7 C:NAG102 4.0 47.0 1.0
CG2 A:THR14 4.1 45.5 1.0
C1 C:NAG102 4.4 50.6 1.0
CD A:ARG16 4.4 60.3 1.0
CG A:ARG16 4.7 57.5 1.0
OD1 C:ASN60 4.8 46.4 1.0
NH1 A:ARG16 4.8 69.9 1.0

Chlorine binding site 3 out of 12 in 3wmp

Go back to Chlorine Binding Sites List in 3wmp
Chlorine binding site 3 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl103

b:53.9
occ:1.00
N B:ASN56 3.1 39.8 1.0
NH2 B:ARG58 3.2 38.4 1.0
OG1 B:THR80 3.3 47.6 1.0
OD1 B:ASN55 3.6 45.2 1.0
CG B:ASN56 3.6 41.2 1.0
NH1 B:ARG58 3.6 38.3 1.0
CB B:ASN55 3.7 41.6 1.0
CB B:ASN56 3.7 40.2 1.0
CA B:ASN55 3.8 40.4 1.0
CZ B:ARG58 3.9 37.6 1.0
OD1 B:ASN56 3.9 41.3 1.0
C B:ASN55 3.9 40.2 1.0
CA B:ASN56 4.0 39.5 1.0
ND2 B:ASN56 4.0 40.1 1.0
CG B:ASN55 4.1 43.8 1.0
CB B:THR80 4.6 46.5 1.0
CD2 B:TYR79 4.9 56.6 1.0

Chlorine binding site 4 out of 12 in 3wmp

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Chlorine binding site 4 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl104

b:55.2
occ:1.00
NH2 B:ARG16 3.0 64.4 1.0
N2 A:NAG101 3.1 47.2 1.0
NE B:ARG16 3.3 61.3 1.0
CZ B:ARG16 3.6 64.2 1.0
C8 A:NAG101 3.7 43.6 1.0
C7 A:NAG101 3.9 44.1 1.0
CE B:MET48 4.0 29.7 1.0
C3 A:NAG101 4.0 53.0 1.0
C2 A:NAG101 4.1 50.2 1.0
O3 A:NAG101 4.2 52.4 1.0
CG2 B:THR14 4.3 41.8 1.0
CD B:ARG16 4.6 56.4 1.0
C1 A:NAG101 4.7 49.2 1.0
CG B:ARG16 4.7 53.6 1.0
OD1 A:ASN60 4.8 45.0 1.0
NH1 B:ARG16 4.9 65.4 1.0

Chlorine binding site 5 out of 12 in 3wmp

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Chlorine binding site 5 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl105

b:58.3
occ:1.00
OG1 C:THR80 3.2 48.3 1.0
OD1 C:ASN55 3.3 46.5 1.0
NH2 C:ARG58 3.3 38.4 1.0
N C:ASN56 3.3 40.9 1.0
CB C:ASN55 3.5 43.3 1.0
NH1 C:ARG58 3.6 40.5 1.0
CA C:ASN55 3.8 43.4 1.0
CG C:ASN55 3.8 46.0 1.0
CZ C:ARG58 3.9 38.9 1.0
CB C:ASN56 3.9 39.5 1.0
CG C:ASN56 4.0 38.1 1.0
C C:ASN55 4.1 42.8 1.0
OD1 C:ASN56 4.1 39.8 1.0
CA C:ASN56 4.2 40.6 1.0
ND2 C:ASN56 4.5 37.9 1.0
CB C:THR80 4.5 46.6 1.0
CD2 C:TYR79 4.7 51.8 1.0
CE2 C:TYR79 4.8 52.4 1.0

Chlorine binding site 6 out of 12 in 3wmp

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Chlorine binding site 6 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl106

b:65.7
occ:1.00
N2 B:NAG101 3.1 46.5 1.0
NE C:ARG16 3.2 64.6 1.0
O C:HOH202 3.5 46.2 1.0
NH2 C:ARG16 3.7 69.7 1.0
C3 B:NAG101 3.7 52.4 1.0
CZ C:ARG16 3.8 67.7 1.0
CE C:MET48 3.8 34.7 1.0
O3 B:NAG101 3.9 52.3 1.0
CG2 C:THR14 3.9 44.5 1.0
C8 B:NAG101 4.0 43.5 1.0
C2 B:NAG101 4.0 49.9 1.0
C7 B:NAG101 4.0 44.6 1.0
CD C:ARG16 4.2 61.5 1.0
C1 B:NAG101 4.6 48.6 1.0
CG C:ARG16 4.6 58.8 1.0
OD1 B:ASN60 4.7 39.0 1.0
CG C:MET48 4.9 33.4 1.0
OG1 C:THR14 4.9 45.5 1.0

Chlorine binding site 7 out of 12 in 3wmp

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Chlorine binding site 7 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl104

b:54.0
occ:1.00
OG1 D:THR80 3.2 42.8 1.0
NH2 D:ARG58 3.2 41.3 1.0
N D:ASN56 3.3 38.3 1.0
OD1 D:ASN55 3.6 48.7 1.0
CB D:ASN55 3.7 43.4 1.0
CG D:ASN56 3.8 37.4 1.0
NH1 D:ARG58 3.8 39.9 1.0
CA D:ASN55 3.8 41.5 1.0
CZ D:ARG58 3.9 40.0 1.0
CB D:ASN56 3.9 37.7 1.0
ND2 D:ASN56 4.0 35.6 1.0
OD1 D:ASN56 4.0 39.7 1.0
C D:ASN55 4.0 39.8 1.0
CG D:ASN55 4.1 46.4 1.0
CA D:ASN56 4.2 37.8 1.0
CB D:THR80 4.5 44.8 1.0
CD2 D:TYR79 4.9 54.6 1.0
CE2 D:TYR79 5.0 55.8 1.0

Chlorine binding site 8 out of 12 in 3wmp

Go back to Chlorine Binding Sites List in 3wmp
Chlorine binding site 8 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl105

b:60.8
occ:1.00
NH2 D:ARG16 3.1 64.2 1.0
N2 E:NAG101 3.2 49.0 1.0
O E:HOH212 3.2 53.9 1.0
NE D:ARG16 3.3 60.4 1.0
CZ D:ARG16 3.6 62.4 1.0
C8 E:NAG101 3.9 45.3 1.0
C3 E:NAG101 4.0 53.6 1.0
CE D:MET48 4.0 35.6 1.0
C7 E:NAG101 4.0 47.0 1.0
C2 E:NAG101 4.1 50.7 1.0
CG2 D:THR14 4.1 43.5 1.0
O3 E:NAG101 4.3 53.3 1.0
C1 E:NAG101 4.5 49.3 1.0
CD D:ARG16 4.5 56.7 1.0
CG D:ARG16 4.7 53.8 1.0
OD1 E:ASN60 4.8 41.1 1.0
NH1 D:ARG16 4.8 65.1 1.0

Chlorine binding site 9 out of 12 in 3wmp

Go back to Chlorine Binding Sites List in 3wmp
Chlorine binding site 9 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl103

b:68.0
occ:1.00
NH2 E:ARG58 2.9 37.1 1.0
N E:ASN56 3.3 40.4 1.0
OG1 E:THR80 3.3 45.1 1.0
NH1 E:ARG58 3.4 39.2 1.0
OD1 E:ASN55 3.5 50.1 1.0
CZ E:ARG58 3.6 37.3 1.0
CG E:ASN56 3.7 40.0 1.0
CB E:ASN55 3.7 44.0 1.0
OD1 E:ASN56 3.9 41.2 1.0
CB E:ASN56 3.9 39.7 1.0
CA E:ASN55 4.0 42.6 1.0
CG E:ASN55 4.0 47.5 1.0
ND2 E:ASN56 4.2 40.0 1.0
C E:ASN55 4.2 41.8 1.0
CA E:ASN56 4.2 40.1 1.0
O E:HOH218 4.2 54.7 1.0
CD2 E:TYR79 4.6 56.1 1.0
CB E:THR80 4.7 44.9 1.0
CE2 E:TYR79 4.8 58.3 1.0
NE E:ARG58 4.9 37.8 1.0

Chlorine binding site 10 out of 12 in 3wmp

Go back to Chlorine Binding Sites List in 3wmp
Chlorine binding site 10 out of 12 in the Crystal Structure of Sll-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Sll-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl104

b:70.5
occ:1.00
NE E:ARG16 3.0 64.1 1.0
N2 F:NAG101 3.2 47.8 1.0
NH2 E:ARG16 3.3 66.3 1.0
CZ E:ARG16 3.4 66.1 1.0
CE E:MET48 3.7 37.5 1.0
C8 F:NAG101 3.7 44.8 1.0
C7 F:NAG101 3.9 46.0 1.0
CD E:ARG16 4.0 59.9 1.0
C3 F:NAG101 4.0 54.4 1.0
O3 F:NAG101 4.0 54.6 1.0
CG2 E:THR14 4.0 46.8 1.0
C2 F:NAG101 4.2 50.7 1.0
NH1 E:ARG16 4.5 67.8 1.0
CG E:ARG16 4.7 55.8 1.0
OD1 F:ASN60 4.8 41.2 1.0
C1 F:NAG101 4.9 49.4 1.0
CG E:MET48 4.9 36.5 1.0
SD E:MET48 5.0 39.9 1.0

Reference:

A.Kita, M.Jimbo, R.Sakai, Y.Morimoto, R.Takeuchi, H.Tanaka, T.Takahashi, K.Miki. Crystal Structure of A Symbiosis Related Lectin: A Structural Implication of Cell Recognition Between the Symbiotic Algae and the Host Coral. To Be Published.
Page generated: Fri Jul 11 12:00:31 2025

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