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Chlorine in PDB 3ww5: Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S, PDB code: 3ww5 was solved by Y.Abe, M.Kubota, Y.Ito, T.Imoto, T.Ueda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.10 / 1.53
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.056, 76.056, 36.764, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 22.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S (pdb code 3ww5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S, PDB code: 3ww5:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 3ww5

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Chlorine binding site 1 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:18.4
occ:1.00
OG A:SER24 2.9 10.4 1.0
N A:GLY26 3.1 4.5 1.0
CB A:SER24 3.4 6.5 1.0
CA A:GLY26 3.5 4.5 1.0
CA A:GLN121 3.7 12.7 1.0
NE2 A:GLN121 4.0 33.0 1.0
CB A:GLN121 4.0 18.0 1.0
CD A:GLN121 4.1 35.3 1.0
N A:GLN121 4.1 12.6 1.0
N A:LEU25 4.1 6.0 1.0
CG A:GLN121 4.1 26.4 1.0
CD1 A:ILE124 4.1 18.4 1.0
C A:SER24 4.3 6.5 1.0
C A:LEU25 4.3 6.8 1.0
CG2 A:VAL120 4.3 9.5 1.0
O A:VAL120 4.4 10.6 1.0
C A:VAL120 4.4 11.7 1.0
CA A:SER24 4.5 7.7 1.0
CG1 A:ILE124 4.5 14.3 1.0
C A:GLY26 4.6 4.7 1.0
OE1 A:GLN121 4.6 42.8 1.0
CA A:LEU25 4.7 5.3 1.0
N A:ASN27 4.7 5.8 1.0
O A:SER24 4.7 6.3 1.0
C A:GLN121 4.9 12.5 1.0
CB A:LEU25 5.0 8.1 1.0

Chlorine binding site 2 out of 5 in 3ww5

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Chlorine binding site 2 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:12.4
occ:1.00
O A:HOH305 3.1 6.0 1.0
O A:THR69 3.2 12.2 1.0
N A:THR69 3.2 7.8 1.0
O A:HOH370 3.3 21.8 1.0
OG A:SER72 3.4 12.8 1.0
N A:ARG68 3.5 7.0 1.0
C A:GLY67 3.6 10.4 1.0
CA A:GLY67 3.7 6.4 1.0
N A:GLY67 3.7 6.3 1.0
C A:THR69 3.7 7.5 1.0
OD1 A:ASN65 3.7 9.1 1.0
CA A:THR69 3.9 6.9 1.0
O A:HOH327 3.9 11.6 1.0
CB A:THR69 4.2 5.6 1.0
C A:ARG68 4.2 8.7 1.0
OD1 A:ASP66 4.2 5.9 1.0
CA A:ARG68 4.3 6.9 1.0
O A:GLY67 4.3 13.4 1.0
O A:HOH369 4.6 2.9 1.0
CB A:SER72 4.7 10.7 1.0
N A:PRO70 4.7 8.4 1.0
C A:ASP66 4.8 8.4 1.0
OG1 A:THR69 4.8 7.8 1.0
N A:ASP66 4.9 3.5 1.0
CG A:ASN65 4.9 9.2 1.0

Chlorine binding site 3 out of 5 in 3ww5

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Chlorine binding site 3 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:24.1
occ:1.00
CE2 A:PHE38 3.7 5.2 1.0
NZ A:LYS33 3.8 16.3 1.0
CZ3 A:TRP123 3.9 12.1 1.0
CD A:ARG5 4.1 9.3 1.0
CE A:LYS33 4.3 15.0 1.0
CD A:LYS33 4.3 7.1 1.0
CB A:ARG5 4.3 8.5 1.0
NE A:ARG5 4.5 12.9 1.0
CZ A:PHE38 4.5 5.2 1.0
CD2 A:PHE38 4.6 5.6 1.0
CG A:ARG5 4.7 8.0 1.0
CH2 A:TRP123 4.7 12.2 1.0
CE3 A:TRP123 4.8 9.4 1.0

Chlorine binding site 4 out of 5 in 3ww5

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Chlorine binding site 4 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:10.4
occ:1.00
OH A:TYR23 3.0 4.8 1.0
CZ A:TYR23 3.6 4.0 1.0
CE2 A:TYR23 3.7 3.5 1.0
CA A:GLY104 4.2 4.8 1.0
O A:ARG21 4.5 10.2 1.0
N A:GLY104 4.7 7.4 1.0
CE1 A:TYR23 4.8 2.5 1.0
CD2 A:TYR23 4.9 3.1 1.0

Chlorine binding site 5 out of 5 in 3ww5

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Chlorine binding site 5 out of 5 in the Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hen Egg White Lysozyme Mutant N46E/D52S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:29.6
occ:1.00
ND2 A:ASN65 3.0 9.6 1.0
O A:HOH350 3.3 14.1 1.0
CB A:PRO79 3.5 7.5 1.0
CA A:PRO79 3.7 4.4 1.0
CB A:ASN65 3.9 5.9 1.0
CG A:ASN65 3.9 9.2 1.0
N A:PRO79 4.1 7.1 1.0
CD A:PRO79 4.2 8.4 1.0
O A:ASN65 4.2 4.5 1.0
CG A:PRO79 4.2 14.6 1.0
C A:ILE78 4.7 6.9 1.0
C A:ASN65 4.8 4.3 1.0
O A:ILE78 4.9 6.3 1.0
CA A:ASN65 4.9 4.3 1.0

Reference:

Y.Abe, M.Kubota, S.Takazaki, Y.Ito, H.Yamamoto, D.Kang, T.Ueda, T.Imoto. Effect on Catalysis By Replacement of Catalytic Residue From Hen Egg White Lysozyme to Venerupis Philippinarum Lysozyme Protein Sci. 2016.
ISSN: ESSN 1469-896X
PubMed: 27291073
DOI: 10.1002/PRO.2966
Page generated: Fri Jul 11 12:08:36 2025

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