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Chlorine in PDB 3zrh: Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd)

Enzymatic activity of Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd)

All present enzymatic activity of Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd):
3.4.19.12;

Protein crystallography data

The structure of Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd), PDB code: 3zrh was solved by J.D.F.Licchesi, M.Akutsu, D.Komander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.712 / 2.23
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.400, 72.150, 133.010, 90.00, 90.00, 90.00
R / Rfree (%) 20.01 / 24.78

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd) (pdb code 3zrh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd), PDB code: 3zrh:

Chlorine binding site 1 out of 1 in 3zrh

Go back to Chlorine Binding Sites List in 3zrh
Chlorine binding site 1 out of 1 in the Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the LYS29, LYS33-Linkage-Specific Trabid Otu Deubiquitinase Domain Reveals An Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1695

b:76.9
occ:1.00
 CD1 A:TRP507 4.0 35.1 1.0
OG A:SER474 4.0 41.8 1.0
CD2 A:TYR478 4.2 37.9 1.0
CG A:TYR478 4.2 38.2 1.0
NE1 A:TRP507 4.4 34.6 1.0
CB A:TYR478 4.4 34.5 1.0
O A:HOH2129 4.5 46.3 1.0
CE2 A:TYR478 4.6 38.6 1.0
CA A:HIS475 4.7 35.5 1.0
CD1 A:TYR478 4.7 33.5 1.0
OE1 A:GLN504 4.8 62.5 1.0
N A:HIS475 4.8 30.1 1.0
CD A:GLN504 4.9 69.2 1.0
CB A:HIS475 4.9 48.7 1.0
CB A:SER474 5.0 35.7 1.0

Reference:

J.D.F.Licchesi, J.Mieszczanek, T.E.T.Mevissen, T.J.Rutherford, M.Akutsu, S.Virdee, F.E.Oualid, J.W.Chin, H.Ovaa, M.Bienz, D.Komander. An Ankyrin-Repeat Ubiquitin-Binding Domain Determines Trabid'S Specificity For Atypical Ubiquitin Chains. Nat.Struct.Mol.Biol. V. 19 62 2011.
ISSN: ISSN 1545-9993
PubMed: 22157957
DOI: 10.1038/NSMB.2169
Page generated: Fri Jul 11 12:28:52 2025

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