Chlorine in PDB 4b1r: Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
Protein crystallography data
The structure of Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline, PDB code: 4b1r
was solved by
S.Eltschkner,
G.J.Palm,
J.Schneider,
W.Hinrichs,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.66 /
1.95
|
Space group
|
I 41 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.360,
68.360,
179.610,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.6 /
26
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
(pdb code 4b1r). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline, PDB code: 4b1r:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 4b1r
Go back to
Chlorine Binding Sites List in 4b1r
Chlorine binding site 1 out
of 6 in the Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1209
b:62.4
occ:0.75
|
CL7
|
A:ITC1209
|
0.0
|
62.4
|
0.8
|
C7
|
A:ITC1209
|
1.8
|
66.3
|
0.8
|
C8
|
A:ITC1209
|
2.8
|
66.7
|
0.8
|
C6A
|
A:ITC1209
|
2.8
|
59.2
|
0.8
|
C6'
|
A:ITC1209
|
3.3
|
49.8
|
0.8
|
C6
|
A:ITC1209
|
3.4
|
54.9
|
0.8
|
NE2
|
A:HIS139
|
3.5
|
36.2
|
1.0
|
OG
|
A:SER135
|
3.5
|
38.8
|
0.5
|
C5A
|
A:ITC1209
|
3.6
|
49.7
|
0.8
|
CB
|
A:SER135
|
3.7
|
38.6
|
0.5
|
CB
|
A:SER135
|
3.8
|
39.3
|
0.5
|
CA
|
A:SER135
|
3.8
|
37.7
|
0.5
|
CA
|
A:SER135
|
3.8
|
38.0
|
0.5
|
CB
|
A:SER138
|
3.8
|
35.9
|
1.0
|
CD2
|
A:HIS139
|
3.8
|
34.8
|
1.0
|
C6B
|
A:ITC1209
|
4.1
|
62.6
|
0.8
|
C9
|
A:ITC1209
|
4.1
|
68.3
|
0.8
|
OG
|
A:SER138
|
4.1
|
39.8
|
1.0
|
C5B
|
A:ITC1209
|
4.3
|
46.6
|
0.8
|
CE1
|
A:HIS139
|
4.3
|
35.9
|
1.0
|
O
|
A:SER135
|
4.4
|
36.3
|
1.0
|
C10
|
A:ITC1209
|
4.6
|
66.1
|
0.8
|
C
|
A:SER135
|
4.6
|
36.3
|
1.0
|
O6
|
A:ITC1209
|
4.7
|
53.5
|
0.8
|
N
|
A:SER135
|
4.8
|
39.0
|
1.0
|
CG
|
A:HIS139
|
4.9
|
34.6
|
1.0
|
C5
|
A:ITC1209
|
4.9
|
46.4
|
0.8
|
C12
|
A:ITC1209
|
5.0
|
53.6
|
0.8
|
|
Chlorine binding site 2 out
of 6 in 4b1r
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Chlorine Binding Sites List in 4b1r
Chlorine binding site 2 out
of 6 in the Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1210
b:65.8
occ:1.00
|
ND2
|
A:ASN5
|
3.2
|
58.7
|
1.0
|
N
|
A:GLU7
|
3.4
|
46.2
|
1.0
|
CB
|
A:ASN5
|
3.7
|
54.0
|
1.0
|
N
|
A:ARG6
|
3.8
|
46.0
|
1.0
|
CB
|
A:GLU7
|
3.8
|
53.3
|
1.0
|
CG
|
A:ASN5
|
3.9
|
56.4
|
1.0
|
CB
|
A:ARG6
|
4.1
|
48.9
|
1.0
|
CA
|
A:GLU7
|
4.2
|
48.6
|
1.0
|
CA
|
A:ARG6
|
4.3
|
45.2
|
1.0
|
O
|
A:HOH2006
|
4.3
|
45.1
|
1.0
|
C
|
A:ARG6
|
4.3
|
44.1
|
1.0
|
C
|
A:ASN5
|
4.4
|
46.6
|
1.0
|
CA
|
A:ASN5
|
4.6
|
50.0
|
1.0
|
O
|
A:HOH2002
|
4.7
|
55.8
|
1.0
|
OE1
|
A:GLU7
|
5.0
|
69.4
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 4b1r
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Chlorine Binding Sites List in 4b1r
Chlorine binding site 3 out
of 6 in the Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1211
b:60.8
occ:1.00
|
CA
|
A:SER2
|
3.6
|
62.3
|
1.0
|
N
|
A:ARG3
|
3.7
|
61.0
|
1.0
|
CB
|
A:SER2
|
3.9
|
64.0
|
1.0
|
C
|
A:SER2
|
4.0
|
58.8
|
1.0
|
CG
|
A:ARG3
|
4.4
|
66.1
|
1.0
|
CA
|
A:ARG3
|
4.8
|
58.1
|
1.0
|
N
|
A:SER2
|
4.8
|
62.0
|
1.0
|
CB
|
A:ARG3
|
4.9
|
61.9
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 4b1r
Go back to
Chlorine Binding Sites List in 4b1r
Chlorine binding site 4 out
of 6 in the Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1212
b:84.0
occ:1.00
|
O
|
A:HOH2015
|
3.2
|
66.3
|
1.0
|
O
|
A:HOH2013
|
3.3
|
47.1
|
1.0
|
N
|
A:LYS48
|
3.3
|
47.2
|
1.0
|
CB
|
A:ASN47
|
3.6
|
48.7
|
1.0
|
CA
|
A:ASN47
|
3.8
|
46.8
|
1.0
|
CB
|
A:LYS48
|
3.9
|
48.1
|
1.0
|
O
|
A:HOH2026
|
4.0
|
61.0
|
1.0
|
C
|
A:ASN47
|
4.1
|
44.9
|
1.0
|
CA
|
A:LYS48
|
4.2
|
45.6
|
1.0
|
OG1
|
A:THR27
|
4.5
|
45.1
|
1.0
|
CG2
|
A:THR27
|
4.5
|
45.6
|
1.0
|
CG
|
A:ASN47
|
5.0
|
49.2
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 4b1r
Go back to
Chlorine Binding Sites List in 4b1r
Chlorine binding site 5 out
of 6 in the Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1213
b:79.8
occ:1.00
|
O
|
A:HOH2003
|
2.9
|
78.5
|
1.0
|
NE
|
A:ARG3
|
4.0
|
66.9
|
1.0
|
NH2
|
A:ARG3
|
4.3
|
66.7
|
1.0
|
CZ
|
A:ARG3
|
4.7
|
65.2
|
1.0
|
CD
|
A:ARG3
|
4.9
|
65.9
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 4b1r
Go back to
Chlorine Binding Sites List in 4b1r
Chlorine binding site 6 out
of 6 in the Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7- Chlortetracycline within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1214
b:47.4
occ:1.00
|
N
|
A:LEU4
|
3.1
|
47.8
|
1.0
|
NH1
|
A:ARG3
|
3.2
|
62.2
|
1.0
|
CB
|
A:LEU4
|
3.9
|
42.7
|
1.0
|
CA
|
A:LEU4
|
3.9
|
44.7
|
1.0
|
CA
|
A:ARG3
|
4.0
|
58.1
|
1.0
|
C
|
A:ARG3
|
4.0
|
51.6
|
1.0
|
CD
|
A:ARG3
|
4.2
|
65.9
|
1.0
|
C
|
A:LEU4
|
4.2
|
46.2
|
1.0
|
CG
|
A:LEU4
|
4.3
|
42.1
|
1.0
|
O
|
A:SER2
|
4.3
|
58.6
|
1.0
|
CZ
|
A:ARG3
|
4.4
|
65.2
|
1.0
|
O
|
A:HOH2004
|
4.4
|
69.2
|
1.0
|
N
|
A:ASN5
|
4.5
|
48.7
|
1.0
|
NE
|
A:ARG3
|
4.8
|
66.9
|
1.0
|
CB
|
A:ARG3
|
4.8
|
61.9
|
1.0
|
O
|
A:LEU4
|
4.9
|
47.1
|
1.0
|
CD1
|
A:LEU4
|
5.0
|
40.2
|
1.0
|
N
|
A:ARG3
|
5.0
|
61.0
|
1.0
|
|
Reference:
S.Eltschkner,
G.J.Palm,
J.Schneider,
W.Hinrichs.
Tetracycline Repressor Class D Mutant H100A in Complex with Iso-7-Chlortetracycline To Be Published.
Page generated: Sun Jul 21 09:38:00 2024
|