Atomistry » Chlorine » PDB 4bjz-4brk » 4br7
Atomistry »
  Chlorine »
    PDB 4bjz-4brk »
      4br7 »

Chlorine in PDB 4br7: Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex

Enzymatic activity of Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex

All present enzymatic activity of Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex:
3.6.1.5;

Protein crystallography data

The structure of Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex, PDB code: 4br7 was solved by M.Zebisch, P.Schaefer, P.Lauble, N.Straeter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.61 / 1.80
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.853, 102.853, 74.779, 90.00, 90.00, 120.00
R / Rfree (%) 16.3 / 20.9

Other elements in 4br7:

The structure of Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex (pdb code 4br7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex, PDB code: 4br7:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4br7

Go back to Chlorine Binding Sites List in 4br7
Chlorine binding site 1 out of 2 in the Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1395

b:26.7
occ:1.00
O A:HOH2130 2.9 31.0 1.0
N A:GLY156 3.1 15.4 1.0
O A:HOH2086 3.3 14.8 1.0
CD A:ARG122 3.5 18.7 1.0
CA A:GLY156 3.9 15.7 1.0
NE A:ARG122 3.9 21.2 1.0
C A:THR155 4.1 15.6 1.0
CA A:THR155 4.1 15.2 1.0
CB A:THR155 4.2 16.4 1.0
CZ A:ARG122 4.6 18.5 1.0
N A:ASN157 4.7 15.2 1.0
CG A:ARG122 4.8 18.4 1.0
OG A:SER225 4.8 15.1 1.0
NH1 A:ARG122 4.8 19.0 1.0
C A:GLY156 4.9 16.1 1.0
CB A:SER225 4.9 14.6 1.0
CG2 A:THR155 4.9 15.8 1.0

Chlorine binding site 2 out of 2 in 4br7

Go back to Chlorine Binding Sites List in 4br7
Chlorine binding site 2 out of 2 in the Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Legionella Pneumophila NTPDASE1 Crystal Form I, Open, Ampnp Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1396

b:39.1
occ:1.00
O A:HOH2272 3.1 53.9 1.0
ND2 A:ASN327 3.3 27.1 1.0
NE2 A:GLN328 3.4 30.1 1.0
CB A:ASN327 3.8 23.2 1.0
CG A:GLN324 3.9 23.0 1.0
CA A:GLN324 3.9 20.9 1.0
OE1 A:GLN323 4.1 51.6 1.0
CG A:ASN327 4.1 26.5 1.0
O A:GLN323 4.2 22.5 1.0
CG A:GLN328 4.3 24.6 1.0
CB A:GLN324 4.3 21.7 1.0
CD A:GLN328 4.3 30.6 1.0
N A:GLN324 4.4 19.9 1.0
C A:GLN323 4.5 22.1 1.0
CG A:GLN323 4.6 31.4 1.0
CD A:GLN323 4.6 45.5 1.0
O A:GLN324 4.8 21.6 1.0
O A:HOH2253 4.9 39.0 1.0
C A:GLN324 4.9 19.5 1.0

Reference:

M.Zebisch, M.Krauss, P.Schaefer, P.Lauble, N.Straeter. Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases Structure V. 21 1460 2013.
ISSN: ISSN 0969-2126
PubMed: 23830739
DOI: 10.1016/J.STR.2013.05.016
Page generated: Fri Jul 11 13:32:37 2025

Last articles

Mg in 443D
Mg in 442D
Mg in 3ZXV
Mg in 430D
Mg in 437D
Mg in 436D
Mg in 3ZXR
Mg in 431D
Mg in 423D
Mg in 429D
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy