Chlorine in PDB 4csw: Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase

The structure of Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase, PDB code: 4csw was solved by M.A.Mcdonough, R.Sekirnik, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.206 / 2.82
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	158.300, 87.690, 90.610, 90.00, 113.10, 90.00
R / Rfree (%)	16.83 / 20.96

The structure of Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Chlorine atom in the Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase (pdb code 4csw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase, PDB code: 4csw:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1391 b:0.7 occ:1.00 CL1 A:UN91391 0.0 0.7 1.0 C7 A:UN91391 1.8 80.9 1.0 N8 A:UN91391 2.7 82.8 1.0 C2 A:UN91391 2.7 76.4 1.0 C1 A:UN91391 2.9 72.3 1.0 OE2 A:GLU42 3.9 98.7 1.0 C9 A:UN91391 4.0 88.7 1.0 C3 A:UN91391 4.0 71.5 1.0 C6 A:UN91391 4.3 67.3 1.0 CG A:GLU42 4.5 86.8 1.0 C10 A:UN91391 4.6 75.8 1.0 CD A:GLU42 4.6 98.4 1.0 O A:PHE79 4.7 69.1 1.0 CB A:PHE79 4.7 65.0 1.0 N14 A:UN91391 4.9 0.9 1.0 C A:PHE79 5.0 69.5 1.0

Chlorine binding site 2 out of 2 in the Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Rhodothermus Marinus Ycfd-Like Ribosomal Protein L16 Arginyl Hydroxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1392 b:97.9 occ:1.00 CL1 A:UN91392 0.0 97.9 1.0 C7 A:UN91392 1.8 75.0 1.0 N8 A:UN91392 2.7 79.1 1.0 C2 A:UN91392 2.7 70.0 1.0 C1 A:UN91392 3.0 65.5 1.0 CG A:MET205 3.1 59.1 1.0 CG A:PRO41 3.7 45.8 1.0 CD1 A:TRP145 3.7 76.4 1.0 CG A:TRP145 3.8 76.3 1.0 SD A:MET205 3.9 70.9 1.0 CD A:PRO41 4.0 46.2 1.0 C9 A:UN91392 4.0 88.6 1.0 CB A:TRP145 4.0 69.5 1.0 C3 A:UN91392 4.0 78.8 1.0 CD1 A:TYR123 4.1 64.2 1.0 CE1 A:TYR123 4.1 67.0 1.0 NE1 A:TRP145 4.2 74.3 1.0 C6 A:UN91392 4.4 70.0 1.0 CB A:MET205 4.4 55.7 1.0 C A:CYS204 4.4 60.0 1.0 O A:CYS204 4.4 59.2 1.0 CD2 A:TRP145 4.4 78.8 1.0 C10 A:UN91392 4.6 86.3 1.0 N A:CYS204 4.6 67.9 1.0 N A:MET205 4.6 58.0 1.0 C A:ASP203 4.6 74.3 1.0 O A:ASP203 4.6 75.5 1.0 CB A:ASP203 4.6 80.2 1.0 CE2 A:TRP145 4.7 78.4 1.0 O2 A:GOL1393 4.9 83.9 1.0 CE A:MET205 4.9 73.1 1.0 CA A:CYS204 4.9 62.1 1.0 O3 A:GOL1393 4.9 83.5 1.0

R.Chowdhury, R.Sekirnik, N.C.Brissett, T.Krojer, C.-H.Ho, S.S.Ng, I.J.Clifton, W.Ge, N.J.Kershaw, G.C.Fox, J.R.C.Muniz, M.Vollmar, C.Phillips, E.S.Pilka, K.L.Kavanagh, F.Von Deflt, U.Oppermann, M.A.Mcdonough, A.J.Doherty, C.J.Schofield. Ribosomal Oxygenases Are Structurally Conserved From Prokaryotes to Humans. Nature V. 510 422 2014.
ISSN: ISSN 0028-0836
PubMed: 24814345
DOI: 10.1038/NATURE13263