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Chlorine in PDB 4d0p: Crystal Structure of Human CSN4

Protein crystallography data

The structure of Crystal Structure of Human CSN4, PDB code: 4d0p was solved by R.D.Bunker, G.M.Lingaraju, N.H.Thoma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.76 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.660, 63.530, 75.800, 90.00, 101.69, 90.00
R / Rfree (%) 17.89 / 19.29

Other elements in 4d0p:

The structure of Crystal Structure of Human CSN4 also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human CSN4 (pdb code 4d0p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Crystal Structure of Human CSN4, PDB code: 4d0p:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 4d0p

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Chlorine binding site 1 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:26.4
occ:1.00
HZ3 A:LYS214 2.3 41.9 1.0
H A:ILE216 2.8 26.7 1.0
HB3 A:LYS214 3.0 26.3 1.0
HA A:LYS214 3.0 22.2 1.0
HG21 A:ILE216 3.1 32.3 1.0
O A:HOH2213 3.1 27.9 1.0
H A:THR215 3.2 23.9 1.0
NZ A:LYS214 3.2 40.9 1.0
HB A:ILE216 3.3 33.3 1.0
HG2 A:LYS214 3.5 24.8 1.0
HZ2 A:LYS214 3.5 41.3 1.0
HE3 A:LYS214 3.5 37.2 1.0
N A:THR215 3.7 22.8 1.0
CB A:LYS214 3.7 23.6 1.0
CA A:LYS214 3.7 22.1 1.0
HG23 A:ILE216 3.8 35.2 1.0
CG2 A:ILE216 3.8 32.7 1.0
N A:ILE216 3.8 24.4 1.0
HZ1 A:LYS214 3.9 41.8 1.0
CE A:LYS214 3.9 36.6 1.0
C A:LYS214 3.9 25.0 1.0
CB A:ILE216 4.0 32.0 1.0
CG A:LYS214 4.0 25.1 1.0
HG1 A:THR215 4.1 30.1 1.0
OG1 A:THR215 4.4 27.9 1.0
CD A:LYS214 4.6 29.2 1.0
CA A:ILE216 4.6 26.8 1.0
HB2 A:LYS214 4.6 22.5 1.0
CA A:THR215 4.6 23.2 1.0
C A:THR215 4.7 26.7 1.0
HG22 A:ILE216 4.8 33.8 1.0
O A:LYS214 4.8 24.9 1.0
HE2 A:LYS214 4.8 37.6 1.0
OE2 A:GLU181 4.8 34.0 1.0
O A:HOH2180 4.9 41.5 1.0
N A:LYS214 5.0 23.2 1.0

Chlorine binding site 2 out of 8 in 4d0p

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Chlorine binding site 2 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:29.7
occ:1.00
H A:SER237 2.4 24.9 1.0
H A:ILE202 2.7 23.1 1.0
HB2 A:PHE201 2.9 22.3 1.0
HB3 A:ALA236 2.9 22.6 1.0
HA A:ALA236 2.9 22.2 1.0
O A:HOH2202 3.0 37.1 1.0
H A:PHE201 3.0 20.1 1.0
O A:HOH2230 3.4 40.5 1.0
N A:SER237 3.4 24.0 1.0
HB A:ILE202 3.5 30.1 1.0
HG21 A:ILE202 3.5 30.7 1.0
N A:ILE202 3.6 23.4 1.0
CB A:ALA236 3.7 21.4 1.0
HB2 A:SER237 3.7 26.3 1.0
CA A:ALA236 3.7 21.1 1.0
N A:PHE201 3.7 20.9 1.0
HD2 A:PHE201 3.8 23.4 1.0
CB A:PHE201 3.9 21.2 1.0
HB1 A:ALA236 4.0 23.1 1.0
OG A:SER237 4.1 38.9 1.0
C A:ALA236 4.1 23.8 1.0
CA A:PHE201 4.1 19.7 1.0
CG2 A:ILE202 4.2 32.2 1.0
CB A:SER237 4.2 30.2 1.0
CB A:ILE202 4.3 30.5 1.0
O A:HOH2196 4.3 37.6 1.0
C A:PHE201 4.3 22.1 1.0
O A:ARG199 4.3 24.5 1.0
HA A:LYS200 4.3 24.1 1.0
HG23 A:ILE202 4.4 33.4 1.0
HG A:SER237 4.4 40.3 1.0
CA A:SER237 4.4 24.9 1.0
HB3 A:PHE201 4.5 22.6 1.0
CA A:ILE202 4.5 23.7 1.0
OE1 A:GLU203 4.6 26.9 1.0
HB2 A:ALA236 4.6 22.8 1.0
C A:LYS200 4.6 23.9 1.0
CD2 A:PHE201 4.6 23.0 1.0
CG A:PHE201 4.8 21.7 1.0
O A:HOH2228 4.8 34.8 1.0
O A:HOH2195 4.9 45.4 1.0
O A:HOH2237 4.9 56.0 1.0
N A:ALA236 4.9 20.6 1.0

Chlorine binding site 3 out of 8 in 4d0p

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Chlorine binding site 3 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:33.0
occ:1.00
HH A:TYR167 1.9 28.4 1.0
OH A:TYR167 2.9 30.0 1.0
HH12 A:ARG170 3.0 40.7 1.0
HE1 A:TYR167 3.1 27.8 1.0
HH11 A:ARG170 3.1 37.5 1.0
HG11 A:VAL128 3.4 26.1 1.0
NH1 A:ARG170 3.5 38.6 1.0
CZ A:TYR167 3.8 26.0 1.0
CE1 A:TYR167 3.8 25.9 1.0
HG12 A:VAL128 4.0 28.9 1.0
CG1 A:VAL128 4.1 27.1 1.0
O A:HOH2135 4.3 42.2 1.0
HG13 A:VAL128 4.6 29.7 1.0
HG23 A:VAL128 4.8 23.9 1.0
CZ A:ARG170 4.8 43.7 1.0

Chlorine binding site 4 out of 8 in 4d0p

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Chlorine binding site 4 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:39.4
occ:1.00
HH11 A:ARG254 2.3 26.1 1.0
HG3 A:GLU219 2.8 42.5 1.0
HD3 A:ARG254 3.1 31.3 1.0
HD2 A:ARG254 3.1 27.9 1.0
NH1 A:ARG254 3.3 26.4 1.0
CZ A:ARG222 3.4 40.6 1.0
HB2 A:ARG222 3.4 22.8 1.0
HD3 A:ARG222 3.4 33.3 1.0
NE A:ARG222 3.5 33.2 1.0
CD A:ARG254 3.6 29.9 1.0
NH2 A:ARG222 3.7 36.0 1.0
HH12 A:ARG254 3.7 25.8 1.0
NH1 A:ARG222 3.7 35.4 1.0
HA A:GLU219 3.7 29.1 1.0
HB3 A:ARG222 3.7 21.2 1.0
HE A:ARG222 3.8 33.4 1.0
CG A:GLU219 3.8 43.3 1.0
HH21 A:ARG222 4.0 34.4 1.0
HH11 A:ARG222 4.0 33.1 1.0
CD A:ARG222 4.0 31.3 1.0
CB A:ARG222 4.1 22.2 1.0
HG2 A:GLU219 4.1 43.3 1.0
HH22 A:ARG222 4.1 37.9 1.0
HH12 A:ARG222 4.1 37.9 1.0
CZ A:ARG254 4.2 27.4 1.0
NE A:ARG254 4.4 25.9 1.0
O A:GLU219 4.6 29.2 1.0
CA A:GLU219 4.6 29.3 1.0
CD A:GLU219 4.6 64.4 1.0
CB A:GLU219 4.6 33.2 1.0
CG A:ARG222 4.7 26.2 1.0
HG2 A:ARG254 4.7 28.9 1.0
HB2 A:GLU219 4.7 32.5 1.0
O A:SER212 4.8 23.2 1.0
OE2 A:GLU219 4.8 56.1 1.0
CG A:ARG254 4.8 29.5 1.0
HD2 A:ARG222 4.9 33.0 1.0
O A:HOH2222 4.9 51.0 1.0

Chlorine binding site 5 out of 8 in 4d0p

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Chlorine binding site 5 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl506

b:43.5
occ:1.00
HH11 A:ARG193 1.6 46.1 1.0
HD3 A:ARG193 2.4 36.5 1.0
NH1 A:ARG193 2.5 46.1 1.0
HG2 A:ARG153 2.9 32.2 1.0
HA A:CYS190 2.9 23.5 1.0
HH12 A:ARG193 3.0 45.9 1.0
HE A:ARG153 3.0 59.3 1.0
O A:HOH2154 3.0 37.6 1.0
HG A:CYS190 3.2 32.4 1.0
HB2 A:CYS190 3.2 28.7 1.0
HG13 A:VAL189 3.4 27.2 1.0
CD A:ARG193 3.4 36.7 1.0
NE A:ARG153 3.5 59.6 1.0
CZ A:ARG193 3.6 61.4 1.0
HD2 A:ARG193 3.7 37.1 1.0
CA A:CYS190 3.7 24.3 1.0
CG A:ARG153 3.8 31.5 1.0
CB A:CYS190 3.8 27.7 1.0
NE A:ARG193 3.9 40.8 1.0
HD3 A:ARG153 4.0 38.0 1.0
CD A:ARG153 4.0 38.7 1.0
HG3 A:ARG153 4.1 30.9 1.0
SG A:CYS190 4.1 31.5 1.0
HH21 A:ARG153 4.1 69.9 1.0
N A:CYS190 4.1 22.6 1.0
HB2 A:ARG193 4.2 17.9 1.0
CZ A:ARG153 4.3 84.3 1.0
H A:CYS190 4.4 23.4 1.0
CG1 A:VAL189 4.4 27.3 1.0
HD12 A:LEU149 4.5 25.5 0.5
NH2 A:ARG153 4.5 70.1 1.0
HD13 A:LEU156 4.6 26.1 1.0
CG A:ARG193 4.6 31.0 1.0
C A:VAL189 4.6 24.2 1.0
HG3 A:ARG193 4.7 30.7 1.0
HG12 A:VAL189 4.7 30.1 1.0
NH2 A:ARG193 4.8 47.0 1.0
O A:VAL189 4.8 22.8 1.0
HB A:VAL189 4.8 27.2 1.0
HB3 A:CYS190 4.8 28.5 1.0
CB A:ARG193 4.9 21.7 1.0
HE A:ARG193 4.9 41.7 1.0
HH22 A:ARG193 5.0 47.1 1.0

Chlorine binding site 6 out of 8 in 4d0p

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Chlorine binding site 6 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl508

b:35.0
occ:1.00
HE2 A:HIS231 2.0 22.2 1.0
H A:ALA260 2.3 25.5 1.0
HB3 A:LEU258 2.8 25.3 1.0
HE3 A:LYS227 2.8 45.2 1.0
HG3 A:LYS227 2.9 24.8 1.0
HB1 A:ALA260 3.0 24.1 1.0
NE2 A:HIS231 3.0 25.3 1.0
CL A:CL510 3.1 39.9 1.0
H A:ALA259 3.1 28.9 1.0
N A:ALA260 3.2 26.3 1.0
HB2 A:ALA259 3.2 28.4 1.0
HB2 A:ALA260 3.3 21.9 1.0
N A:ALA259 3.5 26.9 1.0
CB A:ALA260 3.5 24.3 1.0
HD21 A:LEU258 3.7 31.9 1.0
CB A:LEU258 3.8 26.0 1.0
CE A:LYS227 3.8 45.4 1.0
CG A:LYS227 3.8 22.5 1.0
SD A:MET284 3.9 48.5 1.0
CE1 A:HIS231 3.9 26.5 1.0
HD2 A:LYS227 3.9 32.6 1.0
HE1 A:HIS231 3.9 28.8 1.0
CA A:ALA260 4.0 24.8 1.0
CA A:ALA259 4.0 28.3 1.0
C A:ALA259 4.0 30.1 1.0
HD21 A:LEU230 4.0 27.3 1.0
CB A:ALA259 4.1 30.1 1.0
CD A:LYS227 4.1 31.7 1.0
CD2 A:HIS231 4.1 23.5 1.0
HA A:LEU258 4.1 29.3 1.0
C A:LEU258 4.1 29.3 1.0
HD11 A:LEU258 4.1 27.8 1.0
HD2 A:HIS231 4.2 23.4 1.0
CA A:LEU258 4.3 27.9 1.0
HG2 A:LYS227 4.3 22.0 1.0
HB2 A:LEU258 4.4 25.4 1.0
HZ3 A:LYS227 4.5 48.7 1.0
HB3 A:MET284 4.5 44.1 1.0
HB3 A:ALA260 4.5 26.3 1.0
HE2 A:LYS227 4.5 45.0 1.0
HB1 A:ALA259 4.5 32.5 1.0
CD2 A:LEU258 4.6 32.3 1.0
CG A:LEU258 4.7 28.2 1.0
HA A:ALA260 4.7 24.4 1.0
NZ A:LYS227 4.7 48.2 1.0
HA A:LYS227 4.9 18.9 1.0
HG2 A:MET284 4.9 47.9 1.0
HB3 A:ALA259 4.9 28.4 1.0
CD1 A:LEU258 4.9 28.0 1.0
CG A:MET284 4.9 47.0 1.0
HB2 A:LYS227 4.9 22.0 1.0
HZ2 A:LYS227 4.9 48.6 1.0
HE1 A:PHE281 5.0 34.0 1.0
O A:LEU258 5.0 28.4 1.0
CB A:LYS227 5.0 21.1 1.0

Chlorine binding site 7 out of 8 in 4d0p

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Chlorine binding site 7 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:39.9
occ:1.00
H A:ALA259 2.2 28.9 1.0
HA A:LEU258 2.8 29.3 1.0
HZ3 A:LYS227 2.9 48.7 1.0
CL A:CL508 3.1 35.0 1.0
HD21 A:LEU258 3.1 31.9 1.0
O A:HOH2067 3.1 51.4 1.0
HD2 A:LYS227 3.1 32.6 1.0
N A:ALA259 3.2 26.9 1.0
HE3 A:LYS227 3.3 45.2 1.0
HB2 A:ALA259 3.4 28.4 1.0
HB1 A:ALA259 3.5 32.5 1.0
HB3 A:LEU258 3.6 25.3 1.0
NZ A:LYS227 3.7 48.2 1.0
CA A:LEU258 3.7 27.9 1.0
CB A:ALA259 3.8 30.1 1.0
CE A:LYS227 3.8 45.4 1.0
HD22 A:LEU258 3.9 33.1 1.0
CD A:LYS227 3.9 31.7 1.0
C A:LEU258 3.9 29.3 1.0
CD2 A:LEU258 4.0 32.3 1.0
CA A:ALA259 4.1 28.3 1.0
HZ2 A:LYS227 4.1 48.6 1.0
HG3 A:LYS227 4.1 24.8 1.0
CB A:LEU258 4.2 26.0 1.0
H A:ALA260 4.3 25.5 1.0
HZ1 A:LYS227 4.5 48.1 1.0
O A:GLN257 4.5 35.9 1.0
CG A:LYS227 4.6 22.5 1.0
CG A:LEU258 4.7 28.2 1.0
HD23 A:LEU258 4.8 33.4 1.0
HE2 A:HIS231 4.8 22.2 1.0
HD3 A:LYS227 4.8 32.5 1.0
HA A:ALA259 4.8 29.1 1.0
HB3 A:ALA259 4.9 28.4 1.0
HE2 A:LYS227 4.9 45.0 1.0
HB2 A:LYS227 4.9 22.0 1.0
N A:LEU258 4.9 29.9 1.0
N A:ALA260 5.0 26.3 1.0

Chlorine binding site 8 out of 8 in 4d0p

Go back to Chlorine Binding Sites List in 4d0p
Chlorine binding site 8 out of 8 in the Crystal Structure of Human CSN4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Human CSN4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl511

b:36.4
occ:1.00
HG1 A:THR67 2.3 25.9 1.0
HG A:SER105 2.3 39.5 1.0
O A:HOH2105 2.8 52.4 1.0
HA A:GLN102 2.8 23.9 1.0
HG3 A:GLN102 2.9 25.0 1.0
HA A:THR67 3.0 26.0 1.0
HG21 A:THR67 3.1 29.8 1.0
O A:HOH2064 3.2 40.2 1.0
HG2 A:GLU101 3.3 33.9 1.0
HB2 A:SER105 3.3 24.8 1.0
OG1 A:THR67 3.3 29.6 1.0
OG A:SER105 3.3 38.9 1.0
CB A:SER105 3.7 27.9 1.0
HE21 A:GLN102 3.8 31.8 1.0
CA A:GLN102 3.9 24.3 1.0
CA A:THR67 3.9 25.9 1.0
CB A:THR67 3.9 28.9 1.0
CG2 A:THR67 3.9 30.3 1.0
CG A:GLN102 3.9 25.0 1.0
HB3 A:SER105 3.9 25.5 1.0
HB2 A:CYS70 4.0 33.0 0.7
HB3 A:CYS70 4.1 32.4 0.3
O A:GLU101 4.1 25.7 1.0
HG22 A:THR67 4.3 30.0 1.0
NE2 A:GLN102 4.3 30.4 1.0
CG A:GLU101 4.3 34.2 1.0
N A:GLN102 4.3 24.2 1.0
HG A:CYS70 4.4 35.0 0.3
CB A:GLN102 4.4 26.4 1.0
C A:GLU101 4.4 25.7 1.0
CD A:GLN102 4.5 30.6 1.0
OE2 A:GLU101 4.6 54.3 1.0
HB3 A:GLN102 4.6 26.7 1.0
HB2 A:CYS70 4.7 32.4 0.3
HG2 A:GLN102 4.7 25.8 1.0
CB A:CYS70 4.7 33.6 0.7
N A:THR67 4.7 25.8 1.0
HB3 A:CYS70 4.7 34.2 0.7
H A:SER105 4.8 25.0 1.0
O A:HOH2018 4.8 51.7 1.0
CD A:GLU101 4.8 61.6 1.0
HG3 A:GLU101 4.8 33.8 1.0
CB A:CYS70 4.8 32.7 0.3
O A:THR67 4.8 32.0 1.0
HG23 A:THR67 4.8 31.4 1.0
O A:GLN102 4.9 25.0 1.0
SG A:CYS70 4.9 36.8 0.7
C A:GLN102 4.9 24.9 1.0
C A:THR67 4.9 31.6 1.0
HB A:THR67 5.0 29.4 1.0
HG A:CYS70 5.0 37.1 0.7

Reference:

G.M.Lingaraju, R.D.Bunker, S.Cavadini, D.Hess, U.Hassiepen, M.Renatus, E.S.Fischer, N.H.Thoma. Crystal Structure of the COP9 Signalosome Nature V. 512 161 2014.
ISSN: ISSN 0028-0836
PubMed: 25043011
DOI: 10.1038/NATURE13566
Page generated: Fri Jul 11 14:12:02 2025

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