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Chlorine in PDB 4df0: Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus

Protein crystallography data

The structure of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus, PDB code: 4df0 was solved by A.A.Fedorov, E.V.Fedorov, B.Desai, J.A.Gerlt, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.37 / 1.50
Space group I 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 171.610, 171.610, 171.610, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 23.8

Other elements in 4df0:

The structure of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus also contains other interesting chemical elements:

Nickel (Ni) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus (pdb code 4df0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus, PDB code: 4df0:

Chlorine binding site 1 out of 1 in 4df0

Go back to Chlorine Binding Sites List in 4df0
Chlorine binding site 1 out of 1 in the Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:21.5
occ:1.00
O A:HOH502 3.1 31.7 1.0
O A:HOH403 3.2 17.1 1.0
N A:THR107 3.3 15.5 1.0
O A:HOH469 3.6 28.2 1.0
CA A:MET106 3.6 13.7 1.0
OG1 A:THR107 3.7 21.0 1.0
CB A:MET106 3.7 13.4 1.0
CG2 A:THR107 3.8 18.5 1.0
CE A:MET106 3.8 17.8 1.0
C A:MET106 3.9 14.5 1.0
CD1 A:LEU103 3.9 18.1 0.4
CB A:THR107 4.1 17.1 1.0
CG A:MET106 4.1 17.1 1.0
CG A:PRO155 4.2 18.1 1.0
CA A:THR107 4.3 18.1 1.0
CG1 B:VAL65 4.3 25.6 1.0
CE A:LYS61 4.5 15.2 1.0
CD1 A:LEU103 4.5 16.1 0.6
CD2 A:LEU103 4.6 15.9 0.6
O A:LYS105 4.7 14.9 1.0
SD A:MET106 4.8 17.0 1.0
O B:HOH443 4.9 32.2 1.0
N A:MET106 4.9 15.0 1.0
NZ A:LYS61 5.0 19.1 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, B.Desai, J.A.Gerlt, S.C.Almo. Crystal Structure of Orotidine 5'-Monophosphate Decarboxylase From Thermoproteus Neutrophilus To Be Published.
Page generated: Fri Jul 11 14:20:08 2025

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