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Chlorine in PDB 4dgg: C-Src Kinase Domain in Complex with Rm-1-176

Enzymatic activity of C-Src Kinase Domain in Complex with Rm-1-176

All present enzymatic activity of C-Src Kinase Domain in Complex with Rm-1-176:
2.7.10.2;

Protein crystallography data

The structure of C-Src Kinase Domain in Complex with Rm-1-176, PDB code: 4dgg was solved by E.A.Merritt, E.T.Larson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.55 / 2.65
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 42.170, 63.480, 74.000, 78.73, 88.48, 89.93
R / Rfree (%) 20.8 / 25.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the C-Src Kinase Domain in Complex with Rm-1-176 (pdb code 4dgg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the C-Src Kinase Domain in Complex with Rm-1-176, PDB code: 4dgg:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4dgg

Go back to Chlorine Binding Sites List in 4dgg
Chlorine binding site 1 out of 2 in the C-Src Kinase Domain in Complex with Rm-1-176


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of C-Src Kinase Domain in Complex with Rm-1-176 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:81.7
occ:1.00
CLD A:I76601 0.0 81.7 1.0
CAU A:I76601 1.7 69.9 1.0
CAM A:I76601 2.7 67.1 1.0
CAF A:I76601 2.7 68.8 1.0
CA A:ALA311 3.5 69.7 1.0
CB A:ALA311 3.7 69.8 1.0
CAV A:I76601 4.0 66.1 1.0
CAE A:I76601 4.0 67.8 1.0
CG2 A:ILE336 4.3 29.4 1.0
CB A:MET314 4.3 56.2 1.0
O A:ALA311 4.3 69.4 1.0
N A:ALA311 4.4 73.5 1.0
CD1 A:LEU325 4.4 30.8 1.0
CE1 A:PHE307 4.4 77.0 1.0
C A:ALA311 4.5 69.6 1.0
O A:GLU310 4.5 70.4 1.0
CAG A:I76601 4.5 67.3 1.0
CG1 A:ILE336 4.6 30.8 1.0
SD A:MET314 4.6 55.0 1.0
CZ A:PHE307 4.7 77.0 1.0
C A:GLU310 4.8 75.2 1.0
CG1 A:VAL328 5.0 33.8 1.0

Chlorine binding site 2 out of 2 in 4dgg

Go back to Chlorine Binding Sites List in 4dgg
Chlorine binding site 2 out of 2 in the C-Src Kinase Domain in Complex with Rm-1-176


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of C-Src Kinase Domain in Complex with Rm-1-176 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl601

b:0.5
occ:1.00
CLD B:I76601 0.0 0.5 1.0
CAU B:I76601 1.7 93.4 1.0
CAM B:I76601 2.7 86.4 1.0
CAF B:I76601 2.7 90.7 1.0
CA B:ALA311 3.7 61.0 1.0
CAV B:I76601 4.0 79.3 1.0
CAE B:I76601 4.0 87.3 1.0
CB B:ALA311 4.1 62.1 1.0
O B:GLU310 4.1 63.4 1.0
N B:ALA311 4.1 63.5 1.0
C B:GLU310 4.3 64.5 1.0
CAG B:I76601 4.5 81.7 1.0
CG1 B:ILE336 4.5 37.5 1.0
CD1 B:LEU407 4.7 69.9 1.0
C B:ALA311 4.8 59.6 1.0
O B:PHE307 4.8 69.7 1.0
O B:ALA311 4.9 57.6 1.0
CB B:MET314 5.0 54.6 1.0
CD1 B:ILE336 5.0 38.3 1.0

Reference:

R.Krishnamurty, J.L.Brigham, S.E.Leonard, P.Ranjitkar, E.T.Larson, E.J.Dale, E.A.Merritt, D.J.Maly. Active Site Profiling Reveals Coupling Between Domains in Src-Family Kinases. Nat.Chem.Biol. V. 9 43 2013.
ISSN: ISSN 1552-4450
PubMed: 23143416
DOI: 10.1038/NCHEMBIO.1118
Page generated: Sun Jul 21 12:01:07 2024

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