Chlorine in PDB 4dr8: Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus

Enzymatic activity of Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus

All present enzymatic activity of Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus:
3.5.1.88;

Protein crystallography data

The structure of Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus, PDB code: 4dr8 was solved by D.Lorimer, J.Abendroth, T.Craig, A.Burgin, A.Segall, F.Rohwer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.00 / 1.55
*Space group*	P 1
*Cell size a, b, c (Å), α, β, γ (°)*	43.400, 65.360, 69.030, 80.01, 76.38, 81.71
*R / R_free (%)*	16.2 / 19.4

Other elements in 4dr8:

The structure of Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus (pdb code 4dr8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus, PDB code: 4dr8:

Chlorine binding site 1 out of 1 in 4dr8

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Chlorine Binding Sites List in 4dr8

Chlorine binding site 1 out of 1 in the Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Peptide Deformylase From Synechococcus Elongatus within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl202 b:19.4 occ:1.00	O	B:HOH540	3.3	27.7	1.0
	O	B:HOH323	3.3	18.2	1.0
	N	B:ALA10	3.4	13.4	1.0
	NE2	B:GLN52	3.7	16.3	1.0
	CA	B:VAL9	3.9	13.8	1.0
	CB	B:ALA10	4.0	14.0	1.0
	CG1	B:VAL9	4.1	13.4	1.0
	C	B:VAL9	4.1	13.4	1.0
	CA	B:ALA10	4.3	13.7	1.0
	O	B:ARG8	4.4	16.5	1.0
	CB	B:VAL9	4.5	13.3	1.0
	O	B:ALA10	4.7	12.7	1.0
	CD	B:GLN52	4.7	13.8	1.0
	CG	B:GLN52	4.8	12.0	1.0
	N	B:VAL9	5.0	14.3	1.0

Reference:

J.A.Frank, D.Lorimer, M.Youle, P.Witte, T.Craig, J.Abendroth, F.Rohwer, R.A.Edwards, A.M.Segall, A.B.Burgin. Structure and Function of A Cyanophage-Encoded Peptide Deformylase. Isme J V. 7 1150 2013.
ISSN: ISSN 1751-7362
PubMed: 23407310
DOI: 10.1038/ISMEJ.2013.4

Page generated: Fri Jul 11 14:30:43 2025

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