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Chlorine in PDB 4e6x: Clbp in Complex Boron-Based Inhibitor

Enzymatic activity of Clbp in Complex Boron-Based Inhibitor

All present enzymatic activity of Clbp in Complex Boron-Based Inhibitor:
3.5.2.6;

Protein crystallography data

The structure of Clbp in Complex Boron-Based Inhibitor, PDB code: 4e6x was solved by A.Cougnoux, J.Delmas, R.Bonnet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.55 / 2.24
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 105.050, 152.530, 86.890, 90.00, 123.43, 90.00
R / Rfree (%) 20 / 24.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Clbp in Complex Boron-Based Inhibitor (pdb code 4e6x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Clbp in Complex Boron-Based Inhibitor, PDB code: 4e6x:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4e6x

Go back to Chlorine Binding Sites List in 4e6x
Chlorine binding site 1 out of 2 in the Clbp in Complex Boron-Based Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Clbp in Complex Boron-Based Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl400

b:57.1
occ:0.80
CL1 B:0NG400 0.0 57.1 0.8
C11 B:0NG400 1.8 49.9 0.8
S08 B:0NG400 2.9 47.4 0.8
O10 B:0NG400 3.3 43.9 0.8
N07 B:0NG400 3.5 45.5 0.8
CZ B:PHE316 3.8 21.8 1.0
CD2 B:TYR186 3.8 34.6 1.0
CE2 B:TYR186 3.8 35.7 1.0
CG B:TYR186 3.9 34.3 1.0
CZ B:TYR186 3.9 34.9 1.0
CD1 B:TYR186 4.0 32.3 1.0
CE1 B:TYR186 4.0 31.0 1.0
CE2 B:PHE316 4.2 14.3 1.0
O09 B:0NG400 4.3 45.0 0.8
C06 B:0NG400 4.3 43.9 0.8
OH B:TYR186 4.6 32.6 1.0
CB B:TYR186 4.6 32.1 1.0
CE1 B:PHE316 4.9 22.5 1.0

Chlorine binding site 2 out of 2 in 4e6x

Go back to Chlorine Binding Sites List in 4e6x
Chlorine binding site 2 out of 2 in the Clbp in Complex Boron-Based Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Clbp in Complex Boron-Based Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl400

b:66.6
occ:0.85
CL1 C:0NG400 0.0 66.6 0.8
C11 C:0NG400 1.8 57.5 0.8
S08 C:0NG400 3.1 54.8 0.8
O10 C:0NG400 3.5 51.9 0.8
O C:HOH557 3.5 47.1 1.0
N07 C:0NG400 3.7 50.8 0.8
CZ C:PHE316 3.9 22.9 1.0
CD2 C:TYR186 4.0 34.9 1.0
CE2 C:TYR186 4.1 35.0 1.0
CG C:TYR186 4.1 30.6 1.0
CD1 C:TYR186 4.1 25.7 1.0
CZ C:TYR186 4.1 34.1 1.0
CE1 C:TYR186 4.2 29.7 1.0
CE1 C:PHE316 4.3 17.5 1.0
O09 C:0NG400 4.3 51.9 0.8
C06 C:0NG400 4.4 46.8 0.8
CB C:TYR186 4.8 29.0 1.0
OH C:TYR186 4.8 33.1 1.0

Reference:

A.Cougnoux, J.Delmas, G.Dalmasso, C.Romagnoli, G.Cuevas-Ramos, E.Oswald, F.Prati, R.Bonnet. The Nrp Peptidase Clbp As A Target For the Inhibition of Genotoxicity, Cell Proliferation and Tumorogenesis Mediated By Pks-Harboring Bacteria To Be Published.
Page generated: Fri Jul 11 14:39:48 2025

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