Atomistry » Chlorine » PDB 4e9w-4ego » 4edp
Atomistry »
  Chlorine »
    PDB 4e9w-4ego »
      4edp »

Chlorine in PDB 4edp: 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124

Protein crystallography data

The structure of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124, PDB code: 4edp was solved by A.S.Halavaty, Z.Wawrzak, O.Onopriyenko, S.N.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.10 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.318, 50.743, 143.774, 90.00, 98.83, 90.00
R / Rfree (%) 16.3 / 19.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 (pdb code 4edp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124, PDB code: 4edp:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4edp

Go back to Chlorine Binding Sites List in 4edp
Chlorine binding site 1 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:21.8
occ:1.00
O A:HOH513 3.2 16.1 1.0
O A:HOH521 3.2 21.1 1.0
O A:HOH501 3.3 13.8 1.0
N A:SER92 3.3 15.1 1.0
N A:GLU91 3.6 15.1 1.0
O A:HOH611 3.8 22.0 0.7
CB A:SER92 3.9 18.3 1.0
O A:PHE261 3.9 12.3 1.0
OG A:SER92 3.9 21.1 1.0
CB A:ALA90 4.0 16.9 1.0
CB A:GLU91 4.0 14.0 1.0
CZ A:PHE329 4.1 19.7 1.0
CA A:GLU91 4.1 14.2 1.0
CE2 A:PHE329 4.1 19.6 1.0
C A:GLU91 4.2 14.9 1.0
CA A:SER92 4.2 16.9 1.0
C A:ALA90 4.2 15.5 1.0
CB A:ASN260 4.2 13.6 1.0
CA A:ALA90 4.5 15.5 1.0
CG2 A:THR173 4.5 14.9 1.0
N A:PHE261 4.7 13.5 1.0
CE1 A:PHE329 4.7 19.7 1.0
CD2 A:PHE329 4.8 17.7 1.0
O A:HOH698 4.8 32.5 1.0
O A:HOH611 4.9 17.9 0.3
OD1 A:ASN260 4.9 13.4 1.0
CG A:ASN260 4.9 15.2 1.0
O A:ALA90 5.0 15.4 1.0
C A:PHE261 5.0 12.4 1.0

Chlorine binding site 2 out of 4 in 4edp

Go back to Chlorine Binding Sites List in 4edp
Chlorine binding site 2 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:33.9
occ:0.80
OG A:SER82 3.1 30.9 1.0
O A:HOH663 3.2 34.0 1.0
O A:HOH595 3.3 36.5 1.0
ND2 A:ASN79 3.6 36.4 1.0
CE A:LYS75 3.6 33.3 0.5
CB A:SER82 3.6 29.1 1.0
CA A:MET76 3.7 28.1 1.0
N A:MET76 3.9 28.0 1.0
CG A:LYS75 3.9 32.8 0.5
CB A:MET76 3.9 27.4 1.0
CD1 A:ILE84 3.9 34.9 1.0
C A:LYS75 4.1 29.6 0.5
CB A:ASN79 4.1 35.3 1.0
C A:LYS75 4.1 29.4 0.5
O A:LYS75 4.1 30.8 0.5
CA A:SER82 4.1 30.2 1.0
O A:LYS75 4.1 30.6 0.5
CD A:LYS75 4.2 33.7 0.5
CG A:ASN79 4.3 35.6 1.0
CG1 A:ILE84 4.4 28.6 1.0
CB A:LYS75 4.4 30.7 0.5
CB A:LYS75 4.5 31.4 0.5
NZ A:LYS75 4.5 34.4 0.5
CA A:LYS75 4.9 30.2 0.5
CA A:LYS75 4.9 30.6 0.5
N A:GLN83 5.0 29.2 1.0

Chlorine binding site 3 out of 4 in 4edp

Go back to Chlorine Binding Sites List in 4edp
Chlorine binding site 3 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:52.5
occ:1.00
NZ B:LYS158 3.1 28.6 1.0
N B:GLU149 3.4 19.2 1.0
CE B:LYS158 3.8 27.6 1.0
CA B:ILE148 3.9 21.3 1.0
CG2 B:ILE148 4.0 20.0 1.0
C B:ILE148 4.1 19.9 1.0
CB B:GLU149 4.2 20.9 1.0
O B:GLY147 4.2 27.3 1.0
CA B:GLU149 4.4 18.6 1.0
CB B:ILE148 4.5 20.3 1.0
O B:GLU149 4.5 16.5 1.0
CG B:GLU160 4.8 20.8 1.0
CD B:GLU160 4.8 27.0 1.0
O B:HOH825 5.0 55.3 1.0
C B:GLU149 5.0 17.2 1.0
N B:ILE148 5.0 22.9 1.0

Chlorine binding site 4 out of 4 in 4edp

Go back to Chlorine Binding Sites List in 4edp
Chlorine binding site 4 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:22.6
occ:1.00
O B:HOH534 3.1 17.4 1.0
O B:HOH501 3.2 14.9 1.0
O B:HOH516 3.3 23.1 1.0
N B:SER92 3.3 15.7 1.0
N B:GLU91 3.6 14.3 1.0
O B:HOH644 3.7 29.7 1.0
O B:PHE261 3.8 13.4 1.0
CB B:SER92 3.9 18.3 1.0
OG B:SER92 3.9 20.3 1.0
CB B:GLU91 4.0 14.4 1.0
CB B:ALA90 4.0 15.0 1.0
CA B:GLU91 4.1 14.6 1.0
CE2 B:PHE329 4.1 20.1 1.0
CZ B:PHE329 4.1 21.1 1.0
C B:GLU91 4.2 15.6 1.0
CA B:SER92 4.2 16.8 1.0
C B:ALA90 4.2 14.1 1.0
CB B:ASN260 4.2 12.5 1.0
CG2 B:THR173 4.5 15.4 1.0
CA B:ALA90 4.5 13.4 1.0
O B:HOH795 4.6 51.7 1.0
N B:PHE261 4.6 10.7 1.0
CD2 B:PHE329 4.8 18.5 1.0
CE1 B:PHE329 4.8 18.6 1.0
OD1 B:ASN260 4.9 13.3 1.0
C B:PHE261 4.9 12.6 1.0
CG B:ASN260 4.9 13.2 1.0
O B:HOH616 4.9 28.1 1.0

Reference:

A.S.Halavaty, Z.Wawrzak, O.Onopriyenko, S.N.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 To Be Published.
Page generated: Sun Jul 21 12:47:21 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy