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Chlorine in PDB 4edp: 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124

Protein crystallography data

The structure of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124, PDB code: 4edp was solved by A.S.Halavaty, Z.Wawrzak, O.Onopriyenko, S.N.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.10 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.318, 50.743, 143.774, 90.00, 98.83, 90.00
R / Rfree (%) 16.3 / 19.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 (pdb code 4edp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124, PDB code: 4edp:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4edp

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Chlorine binding site 1 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:21.8
occ:1.00
O A:HOH513 3.2 16.1 1.0
O A:HOH521 3.2 21.1 1.0
O A:HOH501 3.3 13.8 1.0
N A:SER92 3.3 15.1 1.0
N A:GLU91 3.6 15.1 1.0
O A:HOH611 3.8 22.0 0.7
CB A:SER92 3.9 18.3 1.0
O A:PHE261 3.9 12.3 1.0
OG A:SER92 3.9 21.1 1.0
CB A:ALA90 4.0 16.9 1.0
CB A:GLU91 4.0 14.0 1.0
CZ A:PHE329 4.1 19.7 1.0
CA A:GLU91 4.1 14.2 1.0
CE2 A:PHE329 4.1 19.6 1.0
C A:GLU91 4.2 14.9 1.0
CA A:SER92 4.2 16.9 1.0
C A:ALA90 4.2 15.5 1.0
CB A:ASN260 4.2 13.6 1.0
CA A:ALA90 4.5 15.5 1.0
CG2 A:THR173 4.5 14.9 1.0
N A:PHE261 4.7 13.5 1.0
CE1 A:PHE329 4.7 19.7 1.0
CD2 A:PHE329 4.8 17.7 1.0
O A:HOH698 4.8 32.5 1.0
O A:HOH611 4.9 17.9 0.3
OD1 A:ASN260 4.9 13.4 1.0
CG A:ASN260 4.9 15.2 1.0
O A:ALA90 5.0 15.4 1.0
C A:PHE261 5.0 12.4 1.0

Chlorine binding site 2 out of 4 in 4edp

Go back to Chlorine Binding Sites List in 4edp
Chlorine binding site 2 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:33.9
occ:0.80
OG A:SER82 3.1 30.9 1.0
O A:HOH663 3.2 34.0 1.0
O A:HOH595 3.3 36.5 1.0
ND2 A:ASN79 3.6 36.4 1.0
CE A:LYS75 3.6 33.3 0.5
CB A:SER82 3.6 29.1 1.0
CA A:MET76 3.7 28.1 1.0
N A:MET76 3.9 28.0 1.0
CG A:LYS75 3.9 32.8 0.5
CB A:MET76 3.9 27.4 1.0
CD1 A:ILE84 3.9 34.9 1.0
C A:LYS75 4.1 29.6 0.5
CB A:ASN79 4.1 35.3 1.0
C A:LYS75 4.1 29.4 0.5
O A:LYS75 4.1 30.8 0.5
CA A:SER82 4.1 30.2 1.0
O A:LYS75 4.1 30.6 0.5
CD A:LYS75 4.2 33.7 0.5
CG A:ASN79 4.3 35.6 1.0
CG1 A:ILE84 4.4 28.6 1.0
CB A:LYS75 4.4 30.7 0.5
CB A:LYS75 4.5 31.4 0.5
NZ A:LYS75 4.5 34.4 0.5
CA A:LYS75 4.9 30.2 0.5
CA A:LYS75 4.9 30.6 0.5
N A:GLN83 5.0 29.2 1.0

Chlorine binding site 3 out of 4 in 4edp

Go back to Chlorine Binding Sites List in 4edp
Chlorine binding site 3 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:52.5
occ:1.00
NZ B:LYS158 3.1 28.6 1.0
N B:GLU149 3.4 19.2 1.0
CE B:LYS158 3.8 27.6 1.0
CA B:ILE148 3.9 21.3 1.0
CG2 B:ILE148 4.0 20.0 1.0
C B:ILE148 4.1 19.9 1.0
CB B:GLU149 4.2 20.9 1.0
O B:GLY147 4.2 27.3 1.0
CA B:GLU149 4.4 18.6 1.0
CB B:ILE148 4.5 20.3 1.0
O B:GLU149 4.5 16.5 1.0
CG B:GLU160 4.8 20.8 1.0
CD B:GLU160 4.8 27.0 1.0
O B:HOH825 5.0 55.3 1.0
C B:GLU149 5.0 17.2 1.0
N B:ILE148 5.0 22.9 1.0

Chlorine binding site 4 out of 4 in 4edp

Go back to Chlorine Binding Sites List in 4edp
Chlorine binding site 4 out of 4 in the 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:22.6
occ:1.00
O B:HOH534 3.1 17.4 1.0
O B:HOH501 3.2 14.9 1.0
O B:HOH516 3.3 23.1 1.0
N B:SER92 3.3 15.7 1.0
N B:GLU91 3.6 14.3 1.0
O B:HOH644 3.7 29.7 1.0
O B:PHE261 3.8 13.4 1.0
CB B:SER92 3.9 18.3 1.0
OG B:SER92 3.9 20.3 1.0
CB B:GLU91 4.0 14.4 1.0
CB B:ALA90 4.0 15.0 1.0
CA B:GLU91 4.1 14.6 1.0
CE2 B:PHE329 4.1 20.1 1.0
CZ B:PHE329 4.1 21.1 1.0
C B:GLU91 4.2 15.6 1.0
CA B:SER92 4.2 16.8 1.0
C B:ALA90 4.2 14.1 1.0
CB B:ASN260 4.2 12.5 1.0
CG2 B:THR173 4.5 15.4 1.0
CA B:ALA90 4.5 13.4 1.0
O B:HOH795 4.6 51.7 1.0
N B:PHE261 4.6 10.7 1.0
CD2 B:PHE329 4.8 18.5 1.0
CE1 B:PHE329 4.8 18.6 1.0
OD1 B:ASN260 4.9 13.3 1.0
C B:PHE261 4.9 12.6 1.0
CG B:ASN260 4.9 13.2 1.0
O B:HOH616 4.9 28.1 1.0

Reference:

A.S.Halavaty, Z.Wawrzak, O.Onopriyenko, S.N.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.85 Angstrom Resolution Crystal Structure of An Abc Transporter From Clostridium Perfringens Atcc 13124 To Be Published.
Page generated: Fri Jul 11 14:45:43 2025

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