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Chlorine in PDB 4fbj: Structure of the Cif:NEDD8 Complex - Photorhabdus Luminescens Cycle Inhibiting Factor in Complex with Human NEDD8

Protein crystallography data

The structure of Structure of the Cif:NEDD8 Complex - Photorhabdus Luminescens Cycle Inhibiting Factor in Complex with Human NEDD8, PDB code: 4fbj was solved by A.Crow, M.J.Banfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.20 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.730, 56.090, 67.550, 90.00, 104.13, 90.00
R / Rfree (%) 16.5 / 23.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the Cif:NEDD8 Complex - Photorhabdus Luminescens Cycle Inhibiting Factor in Complex with Human NEDD8 (pdb code 4fbj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of the Cif:NEDD8 Complex - Photorhabdus Luminescens Cycle Inhibiting Factor in Complex with Human NEDD8, PDB code: 4fbj:

Chlorine binding site 1 out of 1 in 4fbj

Go back to Chlorine Binding Sites List in 4fbj
Chlorine binding site 1 out of 1 in the Structure of the Cif:NEDD8 Complex - Photorhabdus Luminescens Cycle Inhibiting Factor in Complex with Human NEDD8


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Cif:NEDD8 Complex - Photorhabdus Luminescens Cycle Inhibiting Factor in Complex with Human NEDD8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:25.4
occ:1.00
O A:HOH530 2.7 28.1 1.0
O A:HOH574 3.0 24.6 1.0
O A:HOH784 3.2 22.1 1.0
N A:LEU87 3.2 14.4 1.0
CG A:LEU87 3.8 16.2 1.0
CB A:LEU87 3.8 15.1 1.0
CD A:LYS296 3.8 15.9 1.0
CD1 A:LEU87 3.9 18.8 1.0
CB A:LYS296 3.9 15.0 1.0
CA A:ASP86 3.9 16.0 1.0
CG A:LYS296 4.0 16.5 1.0
C A:ASP86 4.1 16.1 1.0
CA A:LEU87 4.1 14.9 1.0
OD1 A:ASP86 4.3 25.8 1.0
O A:ARG85 4.4 16.7 1.0
CG A:ASP86 4.5 20.8 1.0
NZ A:LYS296 4.6 19.1 1.0
O A:HOH623 4.6 36.4 1.0
O A:LYS296 4.7 23.5 1.0
CA A:LYS296 4.7 18.0 1.0
CB A:ASP86 4.8 17.2 1.0
CE A:LYS296 4.8 16.7 1.0
CD2 A:LEU72 4.8 17.0 1.0
N A:ASP86 4.9 15.3 1.0
N A:ALA88 5.0 15.5 1.0

Reference:

A.Crow, R.K.Hughes, F.Taieb, E.Oswald, M.J.Banfield. The Molecular Basis of NEDD8 Deamidation By the Bacterial Effector Protein Cif Proc.Natl.Acad.Sci.Usa 2012.
ISSN: ESSN 1091-6490
Page generated: Fri Jul 11 15:09:58 2025

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