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Chlorine in PDB 4fj6: Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution, PDB code: 4fj6 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.77 / 1.90
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 171.738, 171.738, 243.786, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 24.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution (pdb code 4fj6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution, PDB code: 4fj6:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4fj6

Go back to Chlorine Binding Sites List in 4fj6
Chlorine binding site 1 out of 3 in the Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl601

b:66.1
occ:1.00
N B:LYS50 3.5 39.3 1.0
N D:LYS50 3.6 36.5 1.0
CB D:GLN49 3.7 41.3 1.0
CB B:GLN49 3.7 44.3 1.0
CD D:LYS136 3.8 41.8 1.0
CA B:GLN49 3.9 40.9 1.0
CG D:LYS136 4.0 37.2 1.0
CE D:LYS136 4.0 43.8 1.0
CB B:LYS50 4.1 42.2 1.0
CA D:GLN49 4.1 38.6 1.0
CB B:LYS136 4.1 30.2 1.0
CG B:GLN49 4.1 47.3 1.0
C B:GLN49 4.2 37.4 1.0
CB D:LYS136 4.3 33.1 1.0
C D:GLN49 4.3 36.6 1.0
CB D:LYS50 4.4 37.8 1.0
CA B:LYS50 4.4 38.6 1.0
OE1 B:GLN49 4.5 55.1 1.0
CA D:LYS50 4.6 36.3 1.0
CG D:GLN49 4.6 44.3 1.0
CD B:GLN49 4.7 51.4 1.0
O B:LYS50 4.9 37.7 1.0
CD D:GLN49 5.0 45.8 1.0
CA B:LYS136 5.0 30.5 1.0

Chlorine binding site 2 out of 3 in 4fj6

Go back to Chlorine Binding Sites List in 4fj6
Chlorine binding site 2 out of 3 in the Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl602

b:50.3
occ:1.00
N B:GLU109 3.1 22.8 1.0
O B:HOH750 3.2 28.4 1.0
O B:HOH769 3.4 24.9 1.0
CB B:GLU109 3.6 29.8 1.0
CG B:GLU109 3.7 34.9 1.0
CA B:GLU109 3.9 25.2 1.0
CA B:LEU108 4.0 21.0 1.0
C B:LEU108 4.0 22.1 1.0
ND2 B:ASN103 4.1 23.1 1.0
O B:ALA107 4.2 20.6 1.0
CD B:GLU109 4.3 43.0 1.0
OD1 B:ASN103 4.5 23.0 1.0
CD2 B:LEU108 4.7 20.6 1.0
N B:SER110 4.7 21.4 1.0
CG B:ASN103 4.8 23.6 1.0
OE2 B:GLU109 4.8 49.9 1.0
C B:GLU109 4.9 22.6 1.0
CB B:LEU108 4.9 21.9 1.0
OE1 B:GLU109 4.9 46.2 1.0
N B:LEU108 5.0 20.3 1.0
C B:ALA107 5.0 20.6 1.0

Chlorine binding site 3 out of 3 in 4fj6

Go back to Chlorine Binding Sites List in 4fj6
Chlorine binding site 3 out of 3 in the Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Glycoside Hydrolase Family 33, Candidate Sialidase (BDI_2946) From Parabacteroides Distasonis Atcc 8503 at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl601

b:49.1
occ:1.00
NH2 D:ARG236 3.3 24.6 1.0
NH1 D:ARG236 3.7 23.3 1.0
CZ D:ARG236 4.0 23.6 1.0
CG2 D:THR238 4.1 28.1 1.0
NZ D:LYS321 4.1 38.3 1.0
O D:HOH1092 4.1 44.3 1.0
CD D:LYS321 4.6 33.1 1.0
CE D:LYS321 4.8 35.9 1.0
OE2 D:GLU245 5.0 27.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 11 15:14:52 2025

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